PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253858
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 863aa    MW: 96124.6 Da    PI: 5.0404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253858genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08264284526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+f+a+ G+C +G++CkF H+
  MDP0000253858 264 ICDFHAK-GWCIRGSSCKFVHV 284
                    69*9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-5259283IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6264284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859264286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MEHLRFLLVQ IIMTSAXPVP ELPCVPWPTE ISEALSLSVP TNIHTKSHRT NVYSRALRMP  60
HSRDDQSLKP AECSEYDIEE EEEDPEMLEE EVEEEEEEEQ EGEAEAEEEE EAEEEEDMED  120
EVEGRVEVDM DISDSPIQAH DHQNDDYVVV NKDAGIXSGQ RTSVDLRDDG NSHLCNSEIM  180
DAKAASSCSG EEMAXAIPMR DNLGKEVRGX VNPEDGMKQV DMQQRNDRKQ MDSRFFRLGA  240
FEIGTTITSP AVETSDRNKH PAIICDFHAK GWCIRGSSCK FVHVKDNPNS SQPQPEGDVA  300
NSTREVQLDE GLRDITERSR SPGFRDPLAS SSGSDFAFSS HLTSEKIRFL EHIGRQHQFH  360
EKRKFPTVIG EESNVGESTD AKKLHSSKDD PGFLSSLKDI ERDDQTRNWP ADKDKSIFMS  420
GLHPEPGFFS NGSISSSGKY FIRKNSSHSS GVGEPDGIWS QHVHRVHSSP LMNLALNSSS  480
RNLSTTGLFP TSRISSWTGF SLPSSSSNLD ASPHDTLKLF DRSKDYRSCT RLPPLLKSSS  540
PFSSSELKSF PVISVSLHSA EIKTKISSND WEPSVPFRPS FILPCAFLSS SGRQYDPLHD  600
SIELPKLANI SGETSFYPEG ATVMNKLHQQ IHGESASGTT RPACDGDTNS MSSHNTYHEK  660
XLDNSCXIRD HNSPGTEAET VGTSAVCLKG TMTGQENPLG LSHLXGSTKQ NKASTAYGDS  720
RHVSDSSGHQ EDIKVDRFRD KNEVDGEHLT DGNVQQESKA VRNFRAALVD LVKELLKPKW  780
REGSLSKDAH NMIVKRAVEK IISAFQPHQI PPTIETVIQY LSVCRPKISK LVEFTNQRSW  840
TVIFGDSVMK QILCFEHTIV HGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959007.10.0protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A498JVG80.0A0A498JVG8_MALDO; Uncharacterized protein
STRINGXP_008356058.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-37C3H family protein