PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000253656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 399aa MW: 44743.4 Da PI: 6.7718 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.8 | 3.7e-31 | 238 | 292 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LHe+Fve+v++LGG++kAtPk+il++m+++gLt+ hvkSHLQkYR+ MDP0000253656 238 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKMMGLDGLTIFHVKSHLQKYRI 292 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.31 | 235 | 295 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-16 | 236 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 236 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-22 | 238 | 293 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-9 | 242 | 291 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.6E-8 | 335 | 358 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MQVRGERSSP IGHVPCITKR KDSESRNGTF QHGSKEAHVG KQACARTNQE TNLEEREKSM 60 SIPILEACKK MKRSFELGNQ SCQIFGQQQQ QAWNNMGIWV QQPTMDHEGS LLQNLGPPKT 120 PSSIISRFES PVSAFYATEL YMGGFPQYDS QACQNPQFPS GQSNNESYSS MNSSEQAPNF 180 DIRNTLQSIG YCNSFTTSPV TQLSFFSGQG KQPPRISSGH VSDCYGDSPS SSPVLSSKTR 240 IRWNQDLHEK FVECVNRLGG ADKATPKAIL KMMGLDGLTI FHVKSHLQKY RIAKYLPDPA 300 EGKSEKRTTL NVEPQLNVKT LLQTYDVNIS RSCLQIKEAL QLQLDVQRCL HEQLEIEEDI 360 EENEIVVPVE SPTLIGEDVL KEEALQVVAI GCNWEPKRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-22 | 238 | 295 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358005.2 | 1e-141 | myb family transcription factor PHL5-like isoform X1 | ||||
TrEMBL | A0A498IGE1 | 1e-157 | A0A498IGE1_MALDO; Uncharacterized protein | ||||
STRING | XP_008358005.1 | 1e-143 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 9e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000253656 |