PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 399aa    MW: 44743.4 Da    PI: 6.7718
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253656genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.7e-31238292155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rW+++LHe+Fve+v++LGG++kAtPk+il++m+++gLt+ hvkSHLQkYR+
  MDP0000253656 238 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKMMGLDGLTIFHVKSHLQKYRI 292
                    68****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.31235295IPR017930Myb domain
SuperFamilySSF466892.33E-16236292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27236293IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22238293IPR006447Myb domain, plants
PfamPF002499.1E-9242291IPR001005SANT/Myb domain
PfamPF143793.6E-8335358IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MQVRGERSSP IGHVPCITKR KDSESRNGTF QHGSKEAHVG KQACARTNQE TNLEEREKSM  60
SIPILEACKK MKRSFELGNQ SCQIFGQQQQ QAWNNMGIWV QQPTMDHEGS LLQNLGPPKT  120
PSSIISRFES PVSAFYATEL YMGGFPQYDS QACQNPQFPS GQSNNESYSS MNSSEQAPNF  180
DIRNTLQSIG YCNSFTTSPV TQLSFFSGQG KQPPRISSGH VSDCYGDSPS SSPVLSSKTR  240
IRWNQDLHEK FVECVNRLGG ADKATPKAIL KMMGLDGLTI FHVKSHLQKY RIAKYLPDPA  300
EGKSEKRTTL NVEPQLNVKT LLQTYDVNIS RSCLQIKEAL QLQLDVQRCL HEQLEIEEDI  360
EENEIVVPVE SPTLIGEDVL KEEALQVVAI GCNWEPKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-22238295259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358005.21e-141myb family transcription factor PHL5-like isoform X1
TrEMBLA0A498IGE11e-157A0A498IGE1_MALDO; Uncharacterized protein
STRINGXP_008358005.11e-143(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.29e-48G2-like family protein