PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000253499
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 356aa    MW: 41157.2 Da    PI: 4.7859
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000253499genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.63.7e-37331261103
                    HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
   HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                    aFl+k+y+i++d+++++++sws+++nsfvvld+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+ll++
  MDP0000253499  33 AFLTKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGQKHLLKN 119
                    69*****************************************************************99.........****************** PP

                    XXXXXXX CS
   HSF_DNA-bind  97 ikrkkse 103
                    i+r+k +
  MDP0000253499 120 IRRRKAS 126
                    ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.9E-4029123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6130123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3630123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNLDQDPVSF SSSSAAXDHP LPLERLYDQG PPAFLTKTYD IVDDPSTNHI VSWSRDNNSF  60
VVLDPNSFAM SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANEAFL RGQKHLLKNI  120
RRRKASHLPQ ASQKTLDSCV EVGRFGLDIE IDQLRRDKQV LMGELVKLRQ QQQANRVYLQ  180
GMEDRLKRTE LKQQHMLSFL ARAMQNPNFV QQLSQXKDLR KELEEAVTKK RRRTIEKGPS  240
NVEVDEFGQV GVETFVKVEP QEXGDISDQF EVSELDQFAI DMPGVSRSQN VHGDQECKER  300
DEEHEGRGKD LDKGFWQDLF NENIDEEIGL LGVQEEDEED VNVLIEELGF LAPSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-283212618123Heat shock factor protein 1
5d5u_B4e-283212327129Heat shock factor protein 1
5d5v_B4e-283212327129Heat shock factor protein 1
5d5v_D4e-283212327129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341007.20.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A498HGN30.0A0A498HGN3_MALDO; Uncharacterized protein
STRINGXP_008341007.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B