PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000253189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 24296.1 Da PI: 9.4241 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 129 | 187 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+ gC+vkk+ver+++d ++v++tYeg Hnhe MDP0000253189 129 MDDGFKWRKYGKKSVKNSPNPRNYYKCSNGGCNVKKRVERDRDDASYVITTYEGVHNHE 187 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-32 | 116 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-27 | 122 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.699 | 124 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-24 | 130 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGAMGAALSS IRVRVAIRPL APPWWPTALG EKYIVDPPPM DFDELSNYLM LDEYDFSRDH 60 QDSSSSQSVG SSSQNFAGGA GSGGSSGEIR LITICKYRRN VEVRRNKLNK VEGGNHRVAF 120 RTKSELEVMD DGFKWRKYGK KSVKNSPNPR NYYKCSNGGC NVKKRVERDR DDASYVITTY 180 EGVHNHESPS VVYYNQMHAD PNNIWTLRAS SQSSASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-24 | 117 | 189 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342835.2 | 2e-96 | probable WRKY transcription factor 51 isoform X1 | ||||
Swissprot | Q93WU9 | 1e-45 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A498I2M6 | 2e-95 | A0A498I2M6_MALDO; Uncharacterized protein | ||||
STRING | XP_008342835.1 | 1e-96 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-45 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000253189 |
Publications ? help Back to Top | |||
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