PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252899
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 753aa    MW: 84355.9 Da    PI: 8.3564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252899genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12567611554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h + Er+RR++iN++f++L++llP+      +K +Ka++L  A eY+ sL
  MDP0000252899 567 HMISERKRREKINESFHTLKSLLPPG-----TKKDKASVLISAREYLTSL 611
                    8889********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351562611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16564631IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-10564615No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15566628IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10567611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13568617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MPPISPSSLS CPLFSLSPPS SSSTDPHGCE RADPAATLPL TRRRRLQHPS PSPSLSDLSL  60
IPLTRRRLSL AGSRLKCRPT NPLLCKMTED ENAELSEKKI EEQQWPVMKE IEQKNATLLN  120
EAEEKNASLS VNKFEVQDTT LMNKTEGKNA PLLNETEENN RKSWSMESQE XSXQLGRNEV  180
LPGNHGFLVF AIVCIHILGE LHTYKRNNRE QCRCRARRRS GRGPLCSIVS LSKIXAFLFF  240
LDGVYDEENQ PSSSSGSLAR QLFNEYRLSV FNVVENDCVP GFAFRNSVPY LELQEMDLQR  300
LASVDTQRQF YQTAVFMGCK SGEIELGLSN VSQIDIKREL MRTWLPEAFS RQLSPHTEVA  360
SRPINVQQNP PSSSSSSLRS LSXIDSPEYS SLLFNIPTTT TSHNIPEIFT QLSSDPLRPI  420
NVNPLEPLPI INLIRTTSTS TSPHQQAIQA FSRTXNIQFP TPEIEDATMT RAILAVLSSS  480
PSSSSYQPPP HTNPPSSSTA HRHLLTPKSS AFKTYSTSAL APRTQMSANL RRQNMHKXSI  540
SFLRSLNLMR LREGIQTTRP TSGQLHHMIS ERKRREKINE SFHTLKSLLP PGTKKDKASV  600
LISAREYLTS LKARVDELSK RNQQLEARLL PPANLGANEA AATAGSSNER VSLTLTHVSS  660
ESSPDQDQQI IDLQVVLRSI ESCTEDMVIR ILEFLKRVEN VSLMSMEANT WISEPNSNIN  720
RVILRLRVDQ GTEWDEAAFX EAVRRVVADL ALI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1570575ERKRRE
2571576RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344123.20.0putative transcription factor bHLH041
TrEMBLA0A498KL830.0A0A498KL83_MALDO; Uncharacterized protein
STRINGXP_008391020.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-51bHLH family protein