PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252347
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 386aa    MW: 43843.5 Da    PI: 6.6192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252347genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013244266123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k+F++   L  H  +H
  MDP0000252347 244 YKCETCNKVFKSYQALGGHRASH 266
                    9************9999998887 PP
2zf-C2H211.30.0011302324123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp C ++Fs+   L  H r+H
  MDP0000252347 302 HECPVCFRVFSSGQALGGHKRSH 324
                    79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.67E-5331No hitNo description
PROSITE profilePS5015711.032431IPR007087Zinc finger, C2H2
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-8426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-5230268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.74E-8242266No hitNo description
PROSITE profilePS5015710.699244271IPR007087Zinc finger, C2H2
SMARTSM003550.01244266IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-11244268IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SuperFamilySSF576674.74E-8297324No hitNo description
PROSITE profilePS501579.224302324IPR007087Zinc finger, C2H2
SMARTSM003550.19302324IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-11302324IPR007087Zinc finger, C2H2
PROSITE patternPS000280304324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEKHECKICM RSFPNGRALG GHMRSHVRNH PIPPKPGEEE SNREQTQFTM DEVDNSASAS  60
SSSEDDGEEE DDDMIYGLRE NPKRSIKLVD PEDSFAAHAG SVVLQDRESE TESSKNPTRR  120
RSKRTRKSSV MELHHHHNHI QYHHHQKLEA LKKIKLKNKV VSSKDSFEPE PVSSISDATR  180
EEDVAFCLMM LSRDKWRKQD HNHQHEQEQE QEQADEAERS MEDTEDSEEH LIKFPRIRTA  240
RRKYKCETCN KVFKSYQALG GHRASHKKIK ASNLNPIYEP ELEQENLNAA GNSSSVAERK  300
IHECPVCFRV FSSGQALGGH KRSHVMTGSA AAAASNSSPP FPWKSLSRLG DSLIDLNLPA  360
PVDDDEISQI ELSAVSDAEF VNHVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375818.10.0zinc finger protein ZAT9-like
TrEMBLA0A498JI750.0A0A498JI75_MALDO; Uncharacterized protein
STRINGXP_008375818.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-46C2H2-like zinc finger protein