PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252095
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 685aa    MW: 76429.6 Da    PI: 5.1334
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-093984312255
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp+++++  LA+++gL++rq+ +WF N+R ++
  MDP0000252095 398 WPYPTEADKIALAESTGLDQRQINNWFINQRKRH 431
                    69*****************************885 PP
2ELK25.53.1e-09351372122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    +LK++L+r ++++L++Lk EFs
  MDP0000252095 351 DLKDRLMRRFGSHLSTLKLEFS 372
                    69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-19138182IPR005540KNOX1
PfamPF037908.7E-19139180IPR005540KNOX1
SMARTSM012561.4E-25198249IPR005541KNOX2
PfamPF037916.2E-24202248IPR005541KNOX2
SMARTSM011881.2E-4351372IPR005539ELK domain
PfamPF037891.5E-6351372IPR005539ELK domain
PROSITE profilePS512139.638351371IPR005539ELK domain
PROSITE profilePS5007112.973371434IPR001356Homeobox domain
SuperFamilySSF466893.08E-19372442IPR009057Homeodomain-like
SMARTSM003899.7E-14373438IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27376435IPR009057Homeodomain-like
CDDcd000861.49E-12383435No hitNo description
PfamPF059206.4E-17391430IPR008422Homeobox KN domain
PROSITE patternPS000270409432IPR017970Homeobox, conserved site
PROSITE profilePS5160827.205433685IPR004033UbiE/COQ5 methyltransferase
PfamPF012092.2E-35480677IPR004033UbiE/COQ5 methyltransferase
SuperFamilySSF533351.15E-25482592IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1508.7E-31484674IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024404.12E-10487592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008168Molecular Functionmethyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MGPVVPPHFI FFAFFLLELE EDINIAAAAA TAAEEDKLVG LYTLMEEMYG LQSTADYGDK  60
GFESTTEYDD RGALMTPENL ILPLDYHSLL HSSVAFLEHN HHQHQREAMF GSNDIVLYSA  120
ASEAASTIIA QREEDVFGAI KTRIASHPTY PRLIHAYIEC QKVGAPPEIA SFLDEIRREN  180
GLYKKQGDYS CNSSSMSSST CLGADPELDE FMETYCDILV KYKSDLSRPF DEASSFLSKI  240
ETQLTNLCTS SSAHASSSRC GFIFNSPRAL TAASVDSLTN YPNEKVERLM IRIFIYVALH  300
DAYGMRAKLV TVLYSFIALI EDEGGGMSSD EDFSGGGIDV QEAQQGGEDR DLKDRLMRRF  360
GSHLSTLKLE FSKKKKKGKL PKEARQTLLD WWSTHYKWPY PTEADKIALA ESTGLDQRQI  420
NNWFINQRKR HWRPSENMQF ENARLPVVVS VTDANCHGFA LPFSAGQRLP SFRFRRSPVR  480
AKMGAFVLDF CSGSGDLAFL LSEKVGSNGK VIGLDFLKEQ LSIASSRQKL KSKACCLNIE  540
WVEGDATDLP FSDRHFDAIT MGYGLRNVVD KYKAMEEMFR VLKAGSILSL SIDDDVVLGS  600
RVSILDFNKS TNPVVSAVQE LMIDNLVVPV ASGFGLEEDY KYLKSSVMAF LPGDELENLA  660
LDVGFSNARY YEIGRSLIGN LVATR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.105700.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498ICI30.0A0A498ICI3_MALDO; 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.11e-92KNOTTED-like from Arabidopsis thaliana 2