PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251967
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 453aa    MW: 51188.9 Da    PI: 8.5344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251967genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.52.1e-13249274126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yktelC+ +++ G+C+yGd C+FaHg
  MDP0000251967 249 YKTELCNKWQEVGECPYGDHCQFAHG 274
                    9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.7E-19243281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-11245280IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-9248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.812248276IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10249274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-11282315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8282316IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859286314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MQNDTAYGGH ATSAMPQSHT DDAVFASLYS AIFDRKASVS QYDVESDHSS SSAHRHRQLY  60
NSLLVQDHQE MVNRHSRCLK RLQETSEEAD ALRRENVHLR SLNLELNKHL SLLVHASVQK  120
QFGSPSSVQT TAPFGIVNGL RDMKIDDKRA EQDMSDESPM SVIESEGGDA ENIDVERFSL  180
PKSISVRSDG YVKAAQAAQA GASTASRTRT TSRPRAATTF NASQKVFVPR GVKEEEAPLE  240
LEVYNQGMYK TELCNKWQEV GECPYGDHCQ FAHGIEELRP VIRHPRYKTE VCRMVLSGVV  300
CPYGHRCHFR HALTENEKLM VPNKPRQRQF NLDSVYKREQ ASIVPVVRWR KKYDMLVKSS  360
DLLPSRFQFP LLFLNFLLIV YNILDSRNPA TLAYLRAGSV LLLTFTGLGC REFSGPVFMR  420
ASSSCIIWRL RSSQTSNFES KPCLESVVTA KSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-22249315470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503594.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F53e-81C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A498HFG60.0A0A498HFG6_MALDO; Uncharacterized protein
STRINGXP_009357366.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-72C3H family protein