PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251651
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 530aa    MW: 59662.5 Da    PI: 9.6309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-14230271344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                    i n++ r+  f kR++ + KKA+ELS LCd++va++++  ++
  MDP0000251651 230 IPNETARKMAFQKRKKSVYKKANELSKLCDIDVALVVYEADQ 271
                    889**********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147034.36E-1059102No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-667116No hitNo description
PROSITE profilePS5006615.04220272IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-4220285IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-6222242IPR002100Transcription factor, MADS-box
CDDcd001202.13E-13224267No hitNo description
SuperFamilySSF554551.18E-14225300IPR002100Transcription factor, MADS-box
PfamPF003192.7E-14230272IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-6242257IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-6257278IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
DNIVLQSSGS LSTPQEADGI ASTASEKHDH VDSGLHDPKS SSERKDNSNA KPYASETDAK  60
RAKQQFAQRS RVRKLQYIAE LERNAEGTEV SAELEFLNQQ NMILSMENKA LKQRLESIGQ  120
EQLIKYYKHS PSHKTEMITM WNKNCWRGRL GGYESCISKT AAAQQQQQQQ QPSSSHRRSN  180
SRDLDSQFAN LSLKHKDANA VNDSQNLEFM RLISQKKKML APSRRSLELI PNETARKMAF  240
QKRKKSVYKK ANELSKLCDI DVALVVYEAD QKKGIRPVQP ETWPQDPAEF NRILSRYKAS  300
KDAAAPGFLK RSFSLSDFYE AKKKKDVDSD DGNGGDDSDG DDGNDNDDDH VDPKVQKRGN  360
KQISKDKYRT WDARIDLFSE DELIKLIASL EAKIQASTLE IHSMERYSAK QNQNFYRTHS  420
SSSKIPQHLK PANFDVQKPP SHDPVNTFIH DTLGKKVTHE LAQWGGFNKN PVNTTTTTPT  480
TSVMQSKNPM NTSTTCTTTS NSAIQSKSSP SVKCPMLPSA WISISQSQKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962266.11e-148agamous-like MADS-box protein AGL82
TrEMBLA0A498HTF11e-112A0A498HTF1_MALDO; Uncharacterized protein
STRINGXP_009355438.11e-126(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.23e-41bZIP family protein