PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000251484
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 571aa    MW: 62984.5 Da    PI: 7.8071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000251484genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181775357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MDP0000251484 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75
                   5679*****************************************************97 PP
2START169.12.9e-531793872205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +
  MDP0000251484 179 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDLPLWLRDCRAVDVLNVLPTAngGTIELLY 273
                    7899******************************************************.**************************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p  df+ +Ry+  l++g++vi+ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+  +++++lr+l++s
  MDP0000251484 274 MQLYAPTTLAPaCDFWLLRYTSILEDGSLVICMRSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSVPEVLRPLYES 369
                    ******************************************9998899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++k+++a+l+++++
  MDP0000251484 370 SAVLAQKMTMAALRQLRQ 387
                    **************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1591276IPR001356Homeobox domain
SMARTSM003891.3E-151480IPR001356Homeobox domain
SuperFamilySSF466894.28E-171680IPR009057Homeodomain-like
CDDcd000861.89E-161777No hitNo description
PfamPF000464.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-181975IPR009057Homeodomain-like
CDDcd146866.83E-769108No hitNo description
PROSITE profilePS5084821.492174397IPR002913START domain
CDDcd088751.48E-77174389No hitNo description
Gene3DG3DSA:3.30.530.201.4E-19176384IPR023393START-like domain
SMARTSM002341.6E-39178388IPR002913START domain
SuperFamilySSF559611.37E-35178389No hitNo description
PfamPF018521.2E-50179387IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAMSCKDGNK HALDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSHIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
TQGTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGSSG IVAYGFVLCL LVFARLLSIA  180
EETLAEFLSK ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLDPTRVAE  240
ILKDLPLWLR DCRAVDVLNV LPTANGGTIE LLYMQLYAPT TLAPACDFWL LRYTSILEDG  300
SLVICMRSLK NTQNGPTMPP VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPCSVP  360
EVLRPLYESS AVLAQKMTMA ALRQLRQIAH EVSQSNVTGW GRRPAALRAL SQRLSRLVYN  420
GGFNIYLSVG EGFFATWKLM EFSSRGFNEA LNGFTDEGWS LMGNDGMDDV TILINSSPDK  480
LMGLNLSFGN GFPAVSNSVL CAKASMLLQN VPPAILLRFL REHRSEWADN NIDAYSAAAV  540
KVGPCSLAGS RVGTFGGQVI LPLAHTLEHE E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.129711e-179bud| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0005530.0KJ000553.1 Prunus persica homeobox protein 15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392743.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A498HD710.0A0A498HD71_MALDO; Uncharacterized protein
STRINGXP_008392743.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]