PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250943
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 692aa    MW: 78313.2 Da    PI: 6.2816
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250943genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.26.8e-1143206891373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+av++ d++ a++lL+++++++sp gd++qRla+yf+ +L+arla+ ++ +y+ l  ++ts   ++e l+ +++    sP+  +s++
  MDP0000250943 320 LRTLLTQCAQAVANYDQRTASELLQKIRHHSSPCGDANQRLAHYFADGLEARLAGATTPTYSFLVGTQTS---TAEILKGYQVXISSSPFKLMSNF 412
                    6789************************************************************999999...89********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN++I++  e+++r+HiiDf+is+G+QWp+++q L++R++gpp+lRiT+++ p++g   +e++eet++rL+k+Ae+++vpfe nv +a+++e+++
  MDP0000250943 413 MANRTIMKLSENATRLHIIDFGISYGFQWPCFIQHLSERTGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIK 507
                    ********************************************************9****************************9.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +e+L++++ E ++Vn++ +l++++de+v  +s+rd vLkl+k+++P+v+++   +  +n++ F++rf eal++ysa+fd +ea++pre+e r+  E
  MDP0000250943 508 FEDLKIDRSELTVVNCMCRLKHIPDETVMASSPRDIVLKLIKKINPDVFIHGVVNGTYNAPFFATRFREALYHYSAFFDIFEATVPREDEMRQLFE 603
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++ gr+ivnvvaceg er+er et+++W+ r  +aGFk++pl++   k +k +l+ +++d +r++e+ +++++ W++r+ +++S W
  MDP0000250943 604 KAIHGRDIVNVVACEGLERVERPETYKQWQVRXVRAGFKQLPLDQALLKRVKXMLKSYHDD-FRIDEDGNWMLQSWRGRTXLALSIW 689
                    ***********************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.589294671IPR005202Transcription factor GRAS
PfamPF035142.4E-111320689IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MDTLLERYDV SMERFNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSPYSSAG  60
SDGDSIDPND FNHPMLKYIS DILLEEDLEG KPCMMQDCLA LQAAEKSFFD VLNPKGPPSP  120
NQPPLSHSLE NSDDDSTPSF HSGDGSSIAA KTEWGFDSSE TSHFQSSLVE SQSDNLLVSD  180
LLSEPQSSEH FGGVGEASKF LPNGSFGTFX QERHHLMHPG PDLWPPGTRT LVRRPENDGY  240
NSTNILKGKK NHQREDVDYP EEGRSSKLPV AFADDSEPPQ EMFDEVLLCH GHHXLGNKQS  300
KGAKTTRSKK QNNNTXIVDL RTLLTQCAQA VANYDQRTAS ELLQKIRHHS SPCGDANQRL  360
AHYFADGLEA RLAGATTPTY SFLVGTQTST AEILKGYQVX ISSSPFKLMS NFMANRTIMK  420
LSENATRLHI IDFGISYGFQ WPCFIQHLSE RTGGPPKLRI TAIELPQPGF RPTERVEETA  480
RRLKKYAERF NVPFECNVIA QKWETIKFED LKIDRSELTV VNCMCRLKHI PDETVMASSP  540
RDIVLKLIKK INPDVFIHGV VNGTYNAPFF ATRFREALYH YSAFFDIFEA TVPREDEMRQ  600
LFEKAIHGRD IVNVVACEGL ERVERPETYK QWQVRXVRAG FKQLPLDQAL LKRVKXMLKS  660
YHDDFRIDED GNWMLQSWRG RTXLALSIWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-423026911380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.248020.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945141.10.0uncharacterized protein LOC103447524
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498KAI20.0A0A498KAI2_MALDO; Uncharacterized protein
STRINGXP_008359011.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]