PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000250927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26267.8 Da PI: 9.0351 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f t +eAa a++aa++kl+g MDP0000250927 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATSFEAALAYDAAARKLYG 90 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.82E-20 | 40 | 100 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-20 | 41 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.47 | 41 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 41 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-30 | 41 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-9 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSTSEMSVGV AEKKPAKRPA QGSSRKGCMK GKGGPENAMC TYKGVRQRTW GKWVAEIREP 60 NRGARLWLGT FATSFEAALA YDAAARKLYG SKAKLNLPDQ QAPNYHHHQL NQHLQHQVLG 120 LILHVIYAAP VKDIAVPVIH NNFPNVKVDQ PHGNYNSGGA ETLPEQDGMK VEKNMSSGVN 180 NEGMDGIFWG NMSESFPVFD DSMWTEAAMS LDLPVVADQG IFGGGSWMGI AGKHHIRLNG 240 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-18 | 42 | 98 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008388158.1 | 1e-159 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A498J8W4 | 1e-99 | A0A498J8W4_MALDO; Uncharacterized protein | ||||
STRING | XP_008388158.1 | 1e-158 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000250927 |