PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250924
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 343aa    MW: 37002.4 Da    PI: 8.213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19119168255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t +eAa a++aa++kl+g
  MDP0000250924 119 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSYEAALAYDAAARKLYG 168
                    69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.32E-22118178No hitNo description
SuperFamilySSF541719.81E-21119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-30119178IPR001471AP2/ERF domain
SMARTSM003802.2E-35119182IPR001471AP2/ERF domain
PROSITE profilePS5103222.023119176IPR001471AP2/ERF domain
PfamPF008478.2E-14119168IPR001471AP2/ERF domain
PRINTSPR003672.7E-9120131IPR001471AP2/ERF domain
PRINTSPR003672.7E-9142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRKQNWNFAP LRLPHEQGSL VCLPPHISIG SVTGYGFSSS PPELNKKIAX KILNSSQKVL  60
TMSTMEMSGG NSSAGVAEMS GGSSSVGVAE KKLAKRPAQG SSRKGCMRGK GGPENAMCTY  120
KGVRQRTWGK WVAEIREPNR GARLWLGTFD TSYEAALAYD AAARKLYGSE AKLNLPDQQA  180
PNYHHYQLNQ HLQHQVFPSS ANAGVPPQIP NQTLVQNNPS GTGTNPACYA PPVKDIAVPV  240
VHNNFPNVKV DQPLGNYNSG GAEILPEQGG MKVENNMSSG VTNEGMDGIF WGNMSESFPV  300
FDDSIWTEAA MSLDLPGVAD QGIFGCGFMD GNFWEHRIRL NGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-18120176360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388157.20.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-122A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008388157.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-40ERF family protein