PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250386
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 437aa    MW: 49719.4 Da    PI: 7.4511
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250386genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-26158223171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r ++sL+llt+kf+kl+ ++++++++ln  a+ L   +v  ++RRiYDi+NVLe++nl+ek++kn+irwkg
  MDP0000250386 158 RFDNSLGLLTKKFIKLIYEAKDRTLDLNRTAEVL---EV--QKRRIYDITNVLEGINLVEKTSKNHIRWKG 223
                    6799******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-26157224IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-17158221IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-32158223IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.4E-24160223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.38E-11236314No hitNo description
PfamPF164212.8E-11239318IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
METEDPNRLL RPSQFQFQLL HSHSQTQSHM SYXYSPLPPS QCLRPQLFPA LAPSXGSDRX  60
RLSGDASASL ATVDARSALA KLSLRPKQEI DNDTQIGGQE AAAGPSKVMK GILPLPQSCS  120
GAKHNGKLKV PKHTKVGTQR STADFCNGLG PAQAIGCRFD NSLGLLTKKF IKLIYEAKDR  180
TLDLNRTAEV LEVQKRRIYD ITNVLEGINL VEKTSKNHIR WKGYDGPTPC ELDDHVSRLK  240
DEVESLXEEE CRLDDAIXEK QELLRALEQD EKYKKYSLNP VVFPCINNQT LIAIKAPQAS  300
YIEVVDPDEA NDDYWFRSEP DVSLTDLWGL RGITKDFLYW NLQRIRXGPK AKTSFKTVLR  360
RVAQRWAMNI DRSVNGIRXL IVPDDMREYH ILFLFCHTKL IXFVEGWIKR YGSCRGFDEV  420
FXDQVSAFRD ADEDCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-20157227676PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23441e-86leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357153.20.0transcription factor E2FC
TrEMBLA0A498JBD50.0A0A498JBD5_MALDO; Uncharacterized protein
STRINGXP_008357153.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.15e-65E2F/DP family protein