PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250248
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 433aa    MW: 48906.4 Da    PI: 6.8706
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250248genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox345e-1195139241
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-H CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLte 41 
                    r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l    +++e
  MDP0000250248  95 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITTELsqhgQISE 139
                    89*****************99***************966666666 PP
2Wus_type_Homeobox61.91.4e-2094141249
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 
                        ar+RWtPtp Q++iLe+l+++G  tP+k++i++it+eL+++G+i+++N
      MDP0000250248  94 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITTELSQHGQISETN 141
                        789*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-890157IPR009057Homeodomain-like
SuperFamilySSF466898.29E-794134IPR009057Homeodomain-like
PfamPF000468.7E-995139IPR001356Homeobox domain
CDDcd000860.0010395131No hitNo description
PfamPF101813.1E-13337400IPR019328GPI-GlcNAc transferase complex, PIG-H component, conserved domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0017176Molecular Functionphosphatidylinositol N-acetylglucosaminyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMEWEKQQLK EQQEMEGNGN GSGNNGNGGV MYVKVMTDEQ LETLRKQIAV YATICEQLVE  60
MHKNLTSQQD LAGVRMGNLY CDPLMTSTGH KITARQRWTP TPVQLQILER LFEQGNGTPS  120
KQKIKEITTE LSQHGQISET NQNAACNHAE SEVETEVDSP KDKKTRPEET FQSQQHSAQR  180
TEDLCFXSPE ISSDLHFLDP HATTVDKMFP SHSGLRSSRH LSEMSFYDEV LANSNEAIKG  240
RLYESLVWGN MRSSITSSKY TYLHDCKWPC EAVDVHHIIV KKSGAKGFFR YFFSLVILAT  300
AFYLFLVKEK SVVIVLWSLL LNAFLVKLLQ KSVEKESVVI MPAFGVQLET HYASGKVIRR  360
FVPMDKILKP VXLECXTPVT CYWSLSLIVH GEAELVLVFK DLRPPMKMLV PIWKALCAAT  420
GTKGSSNTCT EDG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950829.11e-154WUSCHEL-related homeobox 13
SwissprotO817883e-70WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLW9S9Q31e-157W9S9Q3_9ROSA; WUSCHEL-related homeobox 13
STRINGXP_010103252.11e-157(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-71WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]