PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000250216
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 414aa    MW: 44797.4 Da    PI: 7.7797
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000250216genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.15.6e-691773273153
         DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaes 96 
                     g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a++++++++++++++ + r +  k ++ ++l++ +++s +s
  MDP0000250216 177 GGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQNRSQQQQQEQQIQYRGEnpKRQRDNSLACVRIPSDTS 272
                    5789*****************************************************999999997777777776633667777888888888765 PP

         DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                       le + +P+evss+avfrcv+vs++dd +e++aYqtav+igGhvfkG+LydqG++
  MDP0000250216 273 --GLELNPFPPEVSSPAVFRCVKVSAMDDVDEQFAYQTAVNIGGHVFKGLLYDQGMD 327
                    ..588999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-65179327IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.6E-26181223IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-25279326IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MWMNEDRLVR IRDWDRAMRR FIELEGGLAD GLVDHPVAHS LSLKLAYRGQ VIRKMAGLFC  60
LGGRDQSPNS RGKQEGGNQS GRVGGVAAEA AAGGGGGGNL FLYRSTGEPQ AEIYNKGFEI  120
WPSQYHPHQN LNYYSFGVDP SYNSRHLDNN NDGVSADDLS AGLRLTVMRG GGLGSSGGGM  180
NCQDCGNQAK KDCPHLRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQEQF SALQQNRSQQ  240
QQQEQQIQYR GENPKRQRDN SLACVRIPSD TSGLELNPFP PEVSSPAVFR CVKVSAMDDV  300
DEQFAYQTAV NIGGHVFKGL LYDQGMDGQY YPSSGGGGES SSGGQGTSHD HHQDGGGSGG  360
GGHPHHHQQH NLVTVAAAGG TSGNPSTTLL DPSLFPAPFN AFMAGTQYFP PPRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387990.10.0protein SHI RELATED SEQUENCE 7 isoform X2
TrEMBLA0A498HUT30.0A0A498HUT3_MALDO; Uncharacterized protein
STRINGXP_008387990.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-70SHI-related sequence 5