PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000250207

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

CPP

Protein Properties

Length: 656aa MW: 71331.2 Da PI: 8.0007

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000250207	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	26.4	1.4e-08	397	419	17	39
TCR 17 YCeCfaagkkCseeCkCedCkNk 39 YC+Cfaag +C e C+C++C+Nk MDP0000250207 397 YCDCFAAGLYCIEPCSCQECFNK 419 **********************8 PP
2	TCR	51.3	2.2e-16	467	506	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ g+ C+ C+C +CkN+ MDP0000250207 467 RHKRGCNCRKSSCLKKYCECFQGGAGCGILCRCVGCKNTF 506 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	28.122	384	507	IPR005172	CRC domain
SMART	SM01114	0.0017	390	422	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.9E-5	397	419	IPR005172	CRC domain
SMART	SM01114	9.6E-17	467	508	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-11	469	505	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
DSPVFNYISN LSPIEPVKSA GNDHHTFNSL AFASLPSIFA SPQNLSIPYT RFVLRRHHFS 60 DSPKLESFQS GNRNSKSDAV PVSVEQSYLG TDQPECFASG SSSDAVPTEN LELPVEFLNT 120 LKYSSGSPHS NDVHSKGRHS FFEREAQLCR IRRVEQKKDA ARGDLVRLIS DDQLKFDSTT 180 IKENRAGHDP KPVSNQPEGI GRTKETDEAS AIHSGTLXEK LNVNDPSGIV DEKSPKCIHS 240 SCKPSSQSYA IRRRCLDFER PATYKRKSID AXGDSSASVX SSCEVASVEK QLVQTIKGCD 300 YSSSRLPGIG LHLNALATTI ESNLSTVVKH EVHASESQAI NLPNSKISST SLTPSEVSRD 360 ESCKDKAQVA VTSPQICAPG GQEPDHSSPE KKRHAPYCDC FAAGLYCIEP CSCQECFNKP 420 IYENIVLENR KLIESRNPLA FAPKVIAKAV AIPQYAEETN STPSSARHKR GCNCRKSSCL 480 KKYCECFQGG AGCGILCRCV GCKNTFGRKD EAEQAEVGGD ESVDPRKDAV NVSLPTVRDQ 540 DLLMAPPGIC RPPPGQLTSS SKGRPKIFSL HSVLSSSQHE KHLQAIPEDV TLETLASSCS 600 QPSGLKSTSP NSKRVSPPHS SGEFGSAWRG GRKLVLRSIP PFPTLESPRK QSLPPQ

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

DSPVFNYISN LSPIEPVKSA GNDHHTFNSL AFASLPSIFA SPQNLSIPYT RFVLRRHHFS  60
DSPKLESFQS GNRNSKSDAV PVSVEQSYLG TDQPECFASG SSSDAVPTEN LELPVEFLNT  120
LKYSSGSPHS NDVHSKGRHS FFEREAQLCR IRRVEQKKDA ARGDLVRLIS DDQLKFDSTT  180
IKENRAGHDP KPVSNQPEGI GRTKETDEAS AIHSGTLXEK LNVNDPSGIV DEKSPKCIHS  240
SCKPSSQSYA IRRRCLDFER PATYKRKSID AXGDSSASVX SSCEVASVEK QLVQTIKGCD  300
YSSSRLPGIG LHLNALATTI ESNLSTVVKH EVHASESQAI NLPNSKISST SLTPSEVSRD  360
ESCKDKAQVA VTSPQICAPG GQEPDHSSPE KKRHAPYCDC FAAGLYCIEP CSCQECFNKP  420
IYENIVLENR KLIESRNPLA FAPKVIAKAV AIPQYAEETN STPSSARHKR GCNCRKSSCL  480
KKYCECFQGG AGCGILCRCV GCKNTFGRKD EAEQAEVGGD ESVDPRKDAV NVSLPTVRDQ  540
DLLMAPPGIC RPPPGQLTSS SKGRPKIFSL HSVLSSSQHE KHLQAIPEDV TLETLASSCS  600
QPSGLKSTSP NSKRVSPPHS SGEFGSAWRG GRKLVLRSIP PFPTLESPRK QSLPPQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028957382.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	A0A498K3L5	0.0	A0A498K3L5_MALDO; Uncharacterized protein
STRING	XP_008370890.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2619	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-81	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	MDP0000250207