PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000249796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 863aa MW: 96176.2 Da PI: 5.1117 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.4e-08 | 264 | 284 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C +G++CkF H+ MDP0000249796 264 ICDFHAK-GWCIRGSSCKFVHV 284 69*9999.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.97E-5 | 259 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-6 | 264 | 284 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 264 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MEHLRFLLVQ IIMTSARPVP ELPCVPWPTE ISEALSLSVP TNIHTKSHRT NVYSRALRMP 60 HSRDDQSLKP AECSEYDIEE XEEDPEMLEE EVEEEEEEEQ EGEAEAEEEE EAEEEEDMED 120 EVEGRVEVDM DISDSPIQAH DHQNDDYVVV NKDAGIXSGQ RTSVDLRDDG NSHLCNSEIM 180 DAKAASSCSG EEMAYAIPMR DNLGKEVRGV VNPEDGMKQV DMQQRNDRKQ MDSRFFRLGA 240 FEIGTTITSP AVETSDRNKH PAIICDFHAK GWCIRGSSCK FVHVKDNPNS SQPQPEGDVA 300 NSTREVQLDE GLRDITERSR SPGFRDPLAS SSGSDFAFSS HLTSEKIRFL EHIGRQHQFH 360 EKRKFPTVIG EESNVGESTD AKKLHSSKDD PGFLSSLKDI ERDDQTRNWP ADKDKSIFMS 420 GLHPEPGFFS NGSISSSGKY FIRKNSSHSS GVGEPDGIWS QHVHRVHSSP LMNLALNSSS 480 RNLSTTGLFP TSRISSWTGF SLPSSSSNLD ASPHDTLKLF DRSKDYRSCT RLPPLLKSSS 540 PFSSSELKSF PVISVSLHSA EIKTKISSND WEPSVPFRPS FILPCAFLSS SGRQYDPLHD 600 SIELPKLANI SGETSFYPEG ATVMNKLHQQ IHGESASGTT RPACDGDTNS MSSHNTYHEK 660 XLDNSCXIRD HNSPGTEAET VGTSAVCLKG TMTGQENPLG LSHLXGSTKQ NKASTAYGDS 720 RHVSDSSGHQ EDIKVDRFRD KNEVDGEHLT DGNVQQESKA VRNFRAALVD LVKELLKPKW 780 REGSLSKDAH NMIVKRAVEK IISAFQPHQI PPTIETVIQY LSVCRPKISK LVEFTNQRSW 840 TVIFGDSVMK QILCFEHTIV HGI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959007.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1-like isoform X1 | ||||
TrEMBL | A0A498JVG8 | 0.0 | A0A498JVG8_MALDO; Uncharacterized protein | ||||
STRING | XP_008356058.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-37 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000249796 |