PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000249735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 533aa MW: 58452.8 Da PI: 6.7012 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.2 | 1.5e-31 | 139 | 196 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e MDP0000249735 139 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 196 579**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-24 | 141 | 196 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-28 | 141 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.8E-31 | 142 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 143 | 192 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.52E-11 | 293 | 353 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 298 | 356 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-21 | 303 | 358 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MDQLSSQEGE IPITIPVPIP IPINTSFGSG GHGHLIHHHQ QQRPHDPTAA ATARAAVPHN 60 NNKNNHSNFL PSSTVVPQNQ TPHNTNGSNP MPTSLDHSHE EEEEQEEEHH DHVNNANANV 120 VPYKYNTYNN KKQAVVGHNG VRYKECLKNH AAAMGGTATD GCGEFMPSGE EGTIEALNCS 180 ACNCHRNFHR KEVEGEQQQL SSCDYNFHHT INRAAGVGSR KFLLSHEGGG GGRHKSLLAP 240 PQYPHQHQMI MSNYNMGMGM IEMVGSIPSD QSDEQEDHHH HRHHGGGGGG TVGSRPAVGH 300 VAKKRFRTKF TQEQKEKMLN FAEKVGWKIQ KQEDSFVQNF CQEIGVKRRV LKVVDNRKCL 360 IGYLMLGLVQ SEAQECKNCF NSLVLPWVGI GVADPKGLGI GMGGDWSCRR QGVGGGRRVI 420 GDDAIMQDEH EDEHEECDVC DEXRTSCFNS LVLPWVGIGV ADPKGLGIGM GGDWSCRRQG 480 VGGGRRVIRD DAIMQDEHEE CDVRGKTVLA SPNSQGIWGA SLGLAKQGFS WSE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-16 | 304 | 353 | 18 | 67 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.24288 | 1e-92 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339432.1 | 0.0 | zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A498HRQ4 | 0.0 | A0A498HRQ4_MALDO; Uncharacterized protein | ||||
STRING | XP_008339432.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-61 | homeobox protein 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000249735 |