PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000249735
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 533aa    MW: 58452.8 Da    PI: 6.7012
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000249735genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.5e-31139196260
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                    ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve e
  MDP0000249735 139 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEGE 196
                    579**************************9.999*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-24141196IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-28141193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-31142193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.067143192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.52E-11293353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-22298356IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-21303358IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDQLSSQEGE IPITIPVPIP IPINTSFGSG GHGHLIHHHQ QQRPHDPTAA ATARAAVPHN  60
NNKNNHSNFL PSSTVVPQNQ TPHNTNGSNP MPTSLDHSHE EEEEQEEEHH DHVNNANANV  120
VPYKYNTYNN KKQAVVGHNG VRYKECLKNH AAAMGGTATD GCGEFMPSGE EGTIEALNCS  180
ACNCHRNFHR KEVEGEQQQL SSCDYNFHHT INRAAGVGSR KFLLSHEGGG GGRHKSLLAP  240
PQYPHQHQMI MSNYNMGMGM IEMVGSIPSD QSDEQEDHHH HRHHGGGGGG TVGSRPAVGH  300
VAKKRFRTKF TQEQKEKMLN FAEKVGWKIQ KQEDSFVQNF CQEIGVKRRV LKVVDNRKCL  360
IGYLMLGLVQ SEAQECKNCF NSLVLPWVGI GVADPKGLGI GMGGDWSCRR QGVGGGRRVI  420
GDDAIMQDEH EDEHEECDVC DEXRTSCFNS LVLPWVGIGV ADPKGLGIGM GGDWSCRRQG  480
VGGGRRVIRD DAIMQDEHEE CDVRGKTVLA SPNSQGIWGA SLGLAKQGFS WSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-163043531867ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.242881e-92fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339432.10.0zinc-finger homeodomain protein 3-like
TrEMBLA0A498HRQ40.0A0A498HRQ4_MALDO; Uncharacterized protein
STRINGXP_008339432.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-61homeobox protein 31