PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000249507

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 360aa MW: 39738.9 Da PI: 8.3085

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000249507	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	60.8	5.3e-19	2	51	8	57
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakp 57 hsk++ ++g+RdR+vRl + +a++f+d+qd+LG+d + k+++WL p MDP0000249507 2 HSKVCMAKGPRDRSVRLAVYTAIQFYDIQDRLGYDGPNKAVDWLTSRQSP 51 9*******************************************876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.717	1	56	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.1E-16	2	47	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.20.20.80	4.4E-13	151	197	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.66E-72	151	340	IPR017853	Glycoside hydrolase superfamily
Pfam	PF00232	7.2E-10	159	196	IPR001360	Glycoside hydrolase family 1
PROSITE pattern	PS00653	0	165	179	IPR033132	Glycosyl hydrolases family 1, N-terminal conserved site
Gene3D	G3DSA:3.20.20.80	5.7E-66	198	339	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF00232	2.6E-48	198	339	IPR001360	Glycoside hydrolase family 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MHSKVCMAKG PRDRSVRLAV YTAIQFYDIQ DRLGYDGPNK AVDWLTSRQS PILLRLFPGR 60 CFYPGPSSSP TSTLISTRPP SGGGGSEATA AIAASVAVST RYSEMFNVLE RHRRTSCRNM 120 LGSKGGRLLF GFILVLFALL ASAAVEVEPS HYSMPFNRTS FPPGFIFGAG LAAYQSEGAA 180 LVHGRGPSIW DTFTREHPXG TVKGGVNQEG VNFYNNLIDE LLSNGIVPFV TLFHWDTPQA 240 LEDEYGGFLS PKIVNDFQDY ANFCFKTFGD RVKHWVTLNE PVTYCVDGYN GGTYAPGRCS 300 NYVGNCTAGN SATEPYIVGH HLLLAHAHAV KIYRHKYQIN YVILECKFER SWCILTLIVG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MHSKVCMAKG PRDRSVRLAV YTAIQFYDIQ DRLGYDGPNK AVDWLTSRQS PILLRLFPGR  60
CFYPGPSSSP TSTLISTRPP SGGGGSEATA AIAASVAVST RYSEMFNVLE RHRRTSCRNM  120
LGSKGGRLLF GFILVLFALL ASAAVEVEPS HYSMPFNRTS FPPGFIFGAG LAAYQSEGAA  180
LVHGRGPSIW DTFTREHPXG TVKGGVNQEG VNFYNNLIDE LLSNGIVPFV TLFHWDTPQA  240
LEDEYGGFLS PKIVNDFQDY ANFCFKTFGD RVKHWVTLNE PVTYCVDGYN GGTYAPGRCS  300
NYVGNCTAGN SATEPYIVGH HLLLAHAHAV KIYRHKYQIN YVILECKFER SWCILTLIVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wq4_A	4e-82	120	338	1	261	Beta-primeverosidase
3wq4_B	4e-82	120	338	1	261	Beta-primeverosidase
3wq5_A	4e-82	120	338	1	261	Beta-primeverosidase
3wq5_B	4e-82	120	338	1	261	Beta-primeverosidase
3wq6_A	4e-82	120	338	1	261	beta-primeverosidase
3wq6_B	4e-82	120	338	1	261	beta-primeverosidase
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in seeds, at moderate levels in flowers and at low levels in roots, stems and leaves. {ECO:0000269\|PubMed:17548373}.

Functional Description ? help Back to Top
Source	Description
UniProt	Hydrolyzes the disaccharide glycosides vicianin, pNP beta-primeveroside, 2-phenylethyl beta-primeveroside and furcatin. {ECO:0000269\|PubMed:17548373}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028960830.1	1e-156	vicianin hydrolase-like isoform X3
Swissprot	A2SY66	1e-85	VICHY_VICSN; Vicianin hydrolase (Fragment)
TrEMBL	A0A498JG69	1e-152	A0A498JG69_MALDO; Uncharacterized protein
STRING	XP_008346957.1	1e-155	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	6e-19	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000249507

Publications ? help Back to Top
Ahn YO,Saino H,Mizutani M,Shimizu B,Sakata K Vicianin hydrolase is a novel cyanogenic beta-glycosidase specific to beta-vicianoside (6-O-alpha-L-arabinopyranosyl-beta-D-glucopyranoside) in seeds of Vicia angustifolia. Plant Cell Physiol., 2007. 48(7): p. 938-47 [PMID:17548373]