PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000249417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26497.8 Da PI: 9.9183 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.1 | 4.3e-15 | 135 | 223 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k++++s+v+ +l l +f+++h + ++ + l de+g ++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f +v MDP0000249417 135 VKTMLQSHVTGGFWLGLQVSFCKNHlpK----GDEVMXLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF--KVY 220 699*******************888443....44589**************656665....************************997777..888 PP EE- CS B3 96 vfr 98 ++r MDP0000249417 221 IIR 223 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 127 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-22 | 127 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.97E-25 | 132 | 223 | No hit | No description |
PROSITE profile | PS50863 | 10.983 | 134 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-21 | 134 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 135 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVTAKSKLSY EESRQQRLEE NKKRMEALNL PMLAQALNKT PNSPKPSPMK RAGKPRTYEV 60 QMVEVRRSTR VANRPAPDYK EVVAERVMIP RRSYXTNRHR DVANRVYASD EARAAAMVKA 120 DELEASLGSD HPTLVKTMLQ SHVTGGFWLG LQVSFCKNHL PKGDEVMXLI DEDGDEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRPTTFKVY IIRVERPGQA SSEGST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017184860.2 | 1e-175 | B3 domain-containing protein At5g42700-like isoform X2 | ||||
Swissprot | Q9FMZ4 | 1e-77 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A498HT62 | 1e-170 | A0A498HT62_MALDO; Uncharacterized protein | ||||
STRING | XP_008361009.1 | 1e-174 | (Malus domestica) | ||||
STRING | XP_008393817.1 | 1e-174 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-80 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000249417 |
Publications ? help Back to Top | |||
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