PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000249364

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 998aa MW: 109637 Da PI: 7.7526

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000249364	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.9	8e-40	709	785	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h++C+ hsk+p+v+v+g+e rfCqqCsrfh ls+fDe+krsCr+rL++hn+rrrk+q+ MDP0000249364 709 CQVEGCNLDLSSAKDYHRKHRICSNHSKSPKVVVDGVELRFCQQCSRFHGLSDFDENKRSCRKRLSDHNARRRKPQT 785 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56801	1.22E-47	17	337	No hit	No description
Gene3D	G3DSA:3.40.50.980	8.2E-23	30	141	No hit	No description
Pfam	PF00501	1.8E-18	38	135	IPR000873	AMP-dependent synthetase/ligase
Pfam	PF00501	1.3E-15	141	274	IPR000873	AMP-dependent synthetase/ligase
Gene3D	G3DSA:3.40.50.980	9.9E-26	142	275	No hit	No description
Gene3D	G3DSA:3.30.300.30	3.0E-4	276	334	No hit	No description
Gene3D	G3DSA:4.10.1100.10	1.3E-31	705	770	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.701	706	783	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-37	708	788	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-32	709	782	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence Send to blast
MGTFVQNSAQ EDEHIFRSRS PDVRVLDNIT LPEFVLQNAE LYAGNVAFVE AVTGKKITYG 60 EMVRDTRRFA KALRSLGLKK GQVVVVVLPN VAEYAIVALG IMAAGGVFSG ANPSGHASEI 120 KKQVEVAGAK IIVTNGATYE KGVMLTHQNL VANLSSTLFG VTPDMIGKVT VLGQVPFFHI 180 YGITGICCAT LRNKGKVVVM GRFELRTFLN ALISHEVTHA PIVPPIILNL VKNPIVDKFY 240 LTKLRPQAIM TAAAPLAPEV PNAFENKFPG VQVQEVAPAE LEAILLCHPS VEDVAVVPEI 300 XAXSVVIAAX AKEXEEEIIN YVASNVAQYK KTRERRVTTD QAMEQGSRGQ WGHKANEVTL 360 GLHQHTYLVA GSHIFAPQRK VPTEKMNTSW QLSFGRHDIM HDIQDQRLKL WKGNGRLMPA 420 KAFPSLIPQK QSPLQPPQIT ISCGCGCADF RLENSSFETS GAMDNALKQL SYEASARGFE 480 VEFWIYVFHV FCLRSNGVNG DXCSSSGDWV LLXYLKTRFW SSFMNSVLMM EWNEKPPSLW 540 DLENLFMYGA KVTENPKKLQ PADWGIEGER GMNSESFYSI GGDGGSGVSG SDLGDGSSKS 600 SKSASVNSSV EEGKKSNFNF EAFEGFPKDF FDKKDSAEAE ALGSSPTHEV SAGSGEPLLS 660 LKLGKRMYFE DVCAGNNHET SSLSXISTSM ATKTKRFKSA AQSAFASHCQ VEGCNLDLSS 720 AKDYHRKHRI CSNHSKSPKV VVDGVELRFC QQCSRFHGLS DFDENKRSCR KRLSDHNARR 780 RKPQTEVVRH PSRLSSSLFS TDGMSLSLDQ GPYDYTKHAS NLTWDGSCNL KFAQTKEYFP 840 NPAKAGGTAR ELNFPNSGSP GSINVLYQDS SRLSPSKATA AEVLNRGAEE SMISFNLDAT 900 XDIHRALSLL STSPWVSGEG KSVPLDTNQS YHNNSPQQGM HAMTQGVPAS SEYWQTQHPP 960 LDTQAHVSHS HSNVGNQFQX LHQFKAPYAF GYNPNQFS

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence Send to blast

MGTFVQNSAQ EDEHIFRSRS PDVRVLDNIT LPEFVLQNAE LYAGNVAFVE AVTGKKITYG  60
EMVRDTRRFA KALRSLGLKK GQVVVVVLPN VAEYAIVALG IMAAGGVFSG ANPSGHASEI  120
KKQVEVAGAK IIVTNGATYE KGVMLTHQNL VANLSSTLFG VTPDMIGKVT VLGQVPFFHI  180
YGITGICCAT LRNKGKVVVM GRFELRTFLN ALISHEVTHA PIVPPIILNL VKNPIVDKFY  240
LTKLRPQAIM TAAAPLAPEV PNAFENKFPG VQVQEVAPAE LEAILLCHPS VEDVAVVPEI  300
XAXSVVIAAX AKEXEEEIIN YVASNVAQYK KTRERRVTTD QAMEQGSRGQ WGHKANEVTL  360
GLHQHTYLVA GSHIFAPQRK VPTEKMNTSW QLSFGRHDIM HDIQDQRLKL WKGNGRLMPA  420
KAFPSLIPQK QSPLQPPQIT ISCGCGCADF RLENSSFETS GAMDNALKQL SYEASARGFE  480
VEFWIYVFHV FCLRSNGVNG DXCSSSGDWV LLXYLKTRFW SSFMNSVLMM EWNEKPPSLW  540
DLENLFMYGA KVTENPKKLQ PADWGIEGER GMNSESFYSI GGDGGSGVSG SDLGDGSSKS  600
SKSASVNSSV EEGKKSNFNF EAFEGFPKDF FDKKDSAEAE ALGSSPTHEV SAGSGEPLLS  660
LKLGKRMYFE DVCAGNNHET SSLSXISTSM ATKTKRFKSA AQSAFASHCQ VEGCNLDLSS  720
AKDYHRKHRI CSNHSKSPKV VVDGVELRFC QQCSRFHGLS DFDENKRSCR KRLSDHNARR  780
RKPQTEVVRH PSRLSSSLFS TDGMSLSLDQ GPYDYTKHAS NLTWDGSCNL KFAQTKEYFP  840
NPAKAGGTAR ELNFPNSGSP GSINVLYQDS SRLSPSKATA AEVLNRGAEE SMISFNLDAT  900
XDIHRALSLL STSPWVSGEG KSVPLDTNQS YHNNSPQQGM HAMTQGVPAS SEYWQTQHPP  960
LDTQAHVSHS HSNVGNQFQX LHQFKAPYAF GYNPNQFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3a9u_A	4e-29	11	269	4	322	4-coumarate--CoA ligase
3a9v_A	4e-29	11	269	4	322	4-coumarate--CoA ligase
3ni2_A	4e-29	11	269	4	322	4-coumarate:CoA ligase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11849	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4630	30	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	4e-67	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	MDP0000249364