PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000248355

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 331aa MW: 37190.6 Da PI: 9.2472

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000248355	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.5	4.1e-30	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt LH rF++a+e+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ MDP0000248355 69 PRLRWTXXLHLRFIHAMERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 122 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-28	65	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.124	65	125	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-13	67	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-21	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-7	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MMGSXGGSEC SKTSPSDKQN EDGSESGENY GNGGSSKPKN NGGSSSNSTV EEGDQKKVSV 60 RPYVRSKMPR LRWTXXLHLR FIHAMERLGG QDRATPKLVL QLMNIKGLSI AHVKSHLQMY 120 RSKKINDAGQ VLPDRQGHLG ECGDKNIYNL SQLPMLQGYK LYNRRHTTSF RYGSYGDANS 180 WNAFENPRFS RSSTGFQGNW STSSTSNNAY NYLTSCSFGD HPQSSWITRT LKEDCQLYNI 240 RESLKPGELI TSFNTNHGPF QDFDTVTKNL VQDQLKTLKR KASDCHDLDL DLSLRLTSRK 300 NDEDHTHEVD SSLSLCLYSP PTSSKLRSLK E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LM999997	1e-33	LM999997.1 Malus baccata partial kan1-like gene for putative transcription repressor KAN1-like, exons 1-4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008359800.2	0.0	putative two-component response regulator ARR13
TrEMBL	A0A498II92	0.0	A0A498II92_MALDO; Uncharacterized protein
STRING	XP_008359800.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000248355