PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000248279
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 689aa    MW: 75307.4 Da    PI: 6.3041
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000248279genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-094284651954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  MDP0000248279 428 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 465
                    664459******************************88 PP
2BELL126.87.8e-41290361172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag gsakpYt++Al++iSrhFrcL+dai++qi
  MDP0000248279 290 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGGGSAKPYTAVALQTISRHFRCLRDAITGQI 361
                    689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-59209359IPR006563POX domain
PfamPF075266.3E-49216358IPR006563POX domain
PROSITE profilePS5007112.05406469IPR001356Homeobox domain
SMARTSM003893.2E-9409473IPR001356Homeobox domain
CDDcd000864.92E-13409470No hitNo description
SuperFamilySSF466895.13E-17410476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28412475IPR009057Homeodomain-like
PfamPF059202.7E-17426465IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MSTYYAGSNN QKDATPMLYL REPPLPSSYP EAPLLTGNMM MYMNSGSYSD AVAGSSQQQN  60
NCIEVISSVE GSDSNQQQHD VLSHLGGTRI GELGFSPWRE GRNEMLVTHP MGSSSGILHG  120
GQNLQGQGLS LSLSTQIPSG MQMPSISYRN PNMGFASFLS PNPSVSSEGD GRNGSFRDEQ  180
PRNVEYLPSG FPGGNPDSSK GDLSPYGMSS IARTIPHNKY LKAAQQLLDE VVNVQKALKQ  240
HDREKNQSTH DHHKSFKEGD DGSKNDLESG VSSNPQESAS NSPCELSHAE KQELQSKLTK  300
LLSMLDEVDR RYKQYYHQMQ IVVSSFDVIA GGGSAKPYTA VALQTISRHF RCLRDAITGQ  360
IQATRKSLGE QGASGSMKGV GISRLRYVDQ HLRQQRALQQ LGMMQQHAWR PQRGLPESSV  420
SILRAWLFEH FLHPYPKDSD KILLARQTGL TRSQVSNWFI NARVRLWKPM VEEMYKEEAG  480
DAEMDSNSSS ENAPQTKEGD NTRPMEAGVQ DMQPSASSTG TERCSTGQFM DSKSNHFHDV  540
EMAGSAGVAS FQNVTCHEAE AEYGLVKLRE GQRPGMDGSG LISDANVQTD RNNERYMAAA  600
AVYQMPELGR FGSGSGVSLT LGLQHCDGGG SLPISSGTHH GFVAVRGDDL YNPAASSVGS  660
ETADFECLDS GNQQQHRFSS SHLLRDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16415472158Homeobox protein Meis1
4xrs_B2e-16415472158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.133210.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377277.10.0BEL1-like homeodomain protein 7
TrEMBLA0A498K0130.0A0A498K013_MALDO; Uncharacterized protein
STRINGXP_008377277.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-123BEL1-like homeodomain 6