PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000248130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20633.9 Da PI: 10.7629 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.4e-29 | 125 | 175 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva++ifs +gklye+ss MDP0000248130 125 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSARGKLYEFSS 175 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-39 | 117 | 176 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.258 | 117 | 177 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-38 | 119 | 176 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 119 | 173 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 119 | 139 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-27 | 119 | 177 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-26 | 126 | 173 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 139 | 154 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-31 | 154 | 175 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGKNLTHHTP LKQKPRDRPR DVDNRRRVAT PYWTITLSNR TEKFHASAPR TDKDFXNEPF 60 LRCPTGAPNL PATCCHSDGP DITGNRQEWL QGSLIFXEIG FWGFPXFDFR VRKGEKMVRG 120 KTQMKRIENA ASRQVTFSKR RNGLLKKAFE LSVLCDAEVA LVIFSARGKL YEFSSTRYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 117 | 176 | 1 | 60 | MEF2C |
5f28_B | 2e-17 | 117 | 176 | 1 | 60 | MEF2C |
5f28_C | 2e-17 | 117 | 176 | 1 | 60 | MEF2C |
5f28_D | 2e-17 | 117 | 176 | 1 | 60 | MEF2C |
6byy_A | 2e-17 | 117 | 176 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 2e-17 | 117 | 176 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 2e-17 | 117 | 176 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 2e-17 | 117 | 176 | 1 | 60 | MEF2 CHIMERA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16257 | 1e-136 | bud| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB370212 | 1e-133 | AB370212.1 Malus x domestica MADS16 mRNA for MADS-box transcription factor, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-33 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000248130 |