PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000247940
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 904aa    MW: 101589 Da    PI: 5.1902
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000247940genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.75.7e-1084328061373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL+ cA+a+s++d++ +++lL+++++++sp+gd  qRla++f+++L+ar+a++++++    ++ +++++  +e l+a+++   ++P+ ++s +
  MDP0000247940 432 LRNLLILCAQALSTNDFKTTSELLKKVRQHSSPNGDGSQRLAHFFANGLEARMAGTGTGTQMFYTSLASKRTPAVEILKAYQVHLSACPFKRMSIF 527
                    6899***************************************************888888777777777777*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++R++gpp+lRiTg++ p++g   +e + etg+rLa+++e+++vpfe+n+++++++e+++
  MDP0000247940 528 FKNKMILKMAEKATTLHIVDFGILYGFQWPILIQHLSKRAGGPPKLRITGIEVPQPGfrPAEWIDETGRRLARYCERFNVPFEYNAIASQNWESIQ 623
                    ********************************************************9*99***************************999****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    le+L+++++E+laVn++l+ ++llde+++++ +rd+vLkl+++++P+++v++  + +++++ F +rf eal +ysal+d+++ ++pr++eer + E
  MDP0000247940 624 LEDLKTERNEVLAVNSMLRFKNLLDETAEVNCPRDAVLKLIRRMKPDIFVHSIINGSYTAPFFDTRFREALFHYSALYDAFDINIPRDNEERLMFE 719
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    re+ gre++nv+aceg er+er et+++W+ r ++aG++ +p+++   k  k  ++  + + ++++++s+++++gWk+r +++ S+W
  MDP0000247940 720 REFYGREVMNVIACEGVERVERPETYKQWQVRCMRAGLQLLPVDQGLLKIFKDKVKAWYHKDFEIDQDSDWMLQGWKGRIVYASSCW 806
                    ***********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.111406787IPR005202Transcription factor GRAS
PfamPF035142.0E-105432806IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MDHPTFNGVP DYMNGFSIDD LAFSPNSTQF PNLINEYQFN QLSPDLNFMD NRFFTPPDFE  60
QGNIVPKVSV TTFGESFVPS NSLSPPDEGS FSLPNTLSPG GGDTSSDDSD FSESVFKYVN  120
QILMEENIEK KPCMFYDPLG LRMTEKSFYD VLGQQYPFSP NQQPLYINPN VESPDGNISG  180
NCTDCSGSTN SGTSNSIDPQ WVGDLGDQKS SFPQTSLPND YPFQFNSKSS SQLSVPLENG  240
MTRLGDGLRV GDEQHVDNVL QGSSIEEFVA QNIFTDSDSI FQFQRGLEEA SKFLPKSTKL  300
LVDLESNTVS PEVKAHVPIV TVKKEKSERK NLLNGSKGRK NHKREDVDLE EGRSSKQSAV  360
YLEGTQESEL SEMFDKVLLC PGGNNESQCD NVAFKNEASK TLQPNGQAQG SNGNGGKARG  420
KKQGDKKEAV DLRNLLILCA QALSTNDFKT TSELLKKVRQ HSSPNGDGSQ RLAHFFANGL  480
EARMAGTGTG TQMFYTSLAS KRTPAVEILK AYQVHLSACP FKRMSIFFKN KMILKMAEKA  540
TTLHIVDFGI LYGFQWPILI QHLSKRAGGP PKLRITGIEV PQPGFRPAEW IDETGRRLAR  600
YCERFNVPFE YNAIASQNWE SIQLEDLKTE RNEVLAVNSM LRFKNLLDET AEVNCPRDAV  660
LKLIRRMKPD IFVHSIINGS YTAPFFDTRF REALFHYSAL YDAFDINIPR DNEERLMFER  720
EFYGREVMNV IACEGVERVE RPETYKQWQV RCMRAGLQLL PVDQGLLKIF KDKVKAWYHK  780
DFEIDQDSDW MLQGWKGRIV YASSCWVIGG NTVIPSRRRT LTTRLLFLCG SESILTYPIP  840
ASSATSDIRF AAARVAQSRA YMLVPQERES REKSEPSGVD NEGGGGGMVS QQQEEYMDEK  900
ELLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-404158061377Protein SCARECROW
5b3h_D2e-404158061377Protein SCARECROW
5hyz_A2e-404367628328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168679e-86stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324409e-83GU732440.1 Malus x domestica AP2 domain class transcription factor (AP2D16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357051.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498K7W50.0A0A498K7W5_MALDO; Uncharacterized protein
STRINGXP_008357051.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]