PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000247623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 165aa MW: 19033.9 Da PI: 9.4645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.3 | 3.4e-29 | 19 | 122 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g+ W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++ + MDP0000247623 19 FEKVATPSDVGRLNRMVIPKRYAEKHfqvhqsvG---FgKGVLLKFEDEVGKLWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKVGDVVRFERSVGE 111 99************************77665442...04789*************************************************88669 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ +++ MDP0000247623 112 DKKLFIDCRSR 122 99999998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-35 | 12 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-29 | 16 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.89E-25 | 18 | 108 | No hit | No description |
Pfam | PF02362 | 8.5E-27 | 19 | 122 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.747 | 19 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-21 | 19 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKCYHDFMDT CSRERELLFE KVATPSDVGR LNRMVIPKRY AEKHFQVHQS VGFGKGVLLK 60 FEDEVGKLWR FGYCYWSSSQ SYVLSKGWIR FVKEKKLKVG DVVRFERSVG EDKKLFIDCR 120 SRNLDISGIG EIHGTVGDPP ATVQDDGVVR LFGVNISRKP VHCRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-45 | 16 | 128 | 11 | 126 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008379886.1 | 1e-119 | AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q8RZX9 | 1e-44 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
Swissprot | Q9ZWM9 | 1e-44 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A498J553 | 1e-118 | A0A498J553_MALDO; Uncharacterized protein | ||||
STRING | XP_008379886.1 | 1e-119 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 5e-47 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000247623 |
Publications ? help Back to Top | |||
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