PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000247079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 25170.8 Da PI: 8.5782 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 82.6 | 5.8e-26 | 2 | 112 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........edamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r ++ ++sl++eA r+ +Pv+Ga+g++l+ MDP0000247079 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRpgidnifgyQIKIKSLLFEAVGRTMNPVNGATGLLLS 97 6******************************************************************999************************** PP DUF260 83 lqqqleqlkaelall 97 ++++++q++ e++l+ MDP0000247079 98 GKWEVCQAAMETVLR 112 *********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.246 | 1 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-19 | 2 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PGIDNIFGYQ IKIKSLLFEA VGRTMNPVNG ATGLLLSGKW EVCQAAMETV LRGGSLEPLP 120 EYSRDIHYVR EHQVREVQRQ STKKKRPNFD VNXNDDYVEN FRSPDLNLSL TSATXLTSRT 180 KRRDCRAATP SVEDSETTTL XSSSPENNCT AGNLERTKLL RLFI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008373050.2 | 1e-152 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 3e-57 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A498JNH2 | 1e-150 | A0A498JNH2_MALDO; Uncharacterized protein | ||||
STRING | XP_008373048.1 | 1e-151 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-58 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000247079 |