PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246432
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-PHD
Protein Properties Length: 1081aa    MW: 118705 Da    PI: 4.7066
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246432genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.61e-13918969556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +  +++L + F++n+yp+++++e LA++lg+  +qV+ WF N R  +k
  MDP0000246432 918 RKLGEAATQRLSKSFKENHYPDRSMKESLARELGIMAKQVSKWFENARHFWK 969
                    55667789****************************************8877 PP
2PHD37.45.8e-13532587151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ Cg+     +++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  MDP0000246432 532 FCAKCGSkdVSLQNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 587
                    6999**964444********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-13522590IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.0E-13528587IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994530587IPR019787Zinc finger, PHD-finger
PfamPF006282.4E-10532587IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-9532585IPR001965Zinc finger, PHD-type
CDDcd155041.90E-27532584No hitNo description
PROSITE patternPS013590533584IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-13891969IPR009057Homeodomain-like
SuperFamilySSF466893.64E-11907969IPR009057Homeodomain-like
PROSITE profilePS5007113.718911971IPR001356Homeobox domain
SMARTSM003895.5E-12913975IPR001356Homeobox domain
CDDcd000861.23E-10914969No hitNo description
PfamPF000463.4E-11919969IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1081 aa     Download sequence    Send to blast
MADTAQLDIT SECDSSYATK CQEEGTSGQM HEIGSESQCS EPTKQNIGCA IVQNELREIC  60
NAGEQSQSLS ENVTENSHLE QLGLPSENVS KSSQSGAENV FAKQGYQSIS GYKQDESLQT  120
TAAVFPCTMK DQLQSFSGNM SKNSLIDQME MPCEDLGVNG PTHKTSFSGQ MPLEQKNDCG  180
FGTSSSELAE EKHPSASDHV QNEQLQAIIQ VPICGSNQHL QSSSENVNRT SLNEQAGLPS  240
EDLSKTCQTD KVSCSNQTTL QEINEFGCGS VHGEPETQKD QLDSVPAHNN EVTTTEAAPS  300
SIVFEQSRPC IEAMTQDSPT GHLELPLKDA SKSPPIDKEM EQLPADVTQN SSLEKTEKPS  360
KNAPKDKQNP KSRKKKYVSK SSVGSDRVLR SKTGEKTKNP KLSNDVSTLE SSNSVANPSN  420
VEGKRRKKRK KRQLNKVIDD EFSRVRKHLR YLLNRISYEK SLIDAYSGEG WKGSSLEKLK  480
PEKELQRATS EILQRKLKIR DLFQRLDSLC SEGMFPESLF DSEGQIDSED IFCAKCGSKD  540
VSLQNDIILC DGACDRGFHQ FCLEPPLLSE DIPPDDEGWL CPGCDCKVDC FDLLNDSQGT  600
DLSVADSWEK VFPEAAAAAS GHNQEHTHGL PSDDSDDNDY DPDGPETDDE VQGEESSSDD  660
ESKYASASDG LETPKNNDEQ YLGLPSDDSE DDDYNPDAPE VTEELKKESS SSDFTSDSED  720
LGASLDDNNM FSEDVESPKS MSLDESGPLR GSGKQSSRRG QKKQPLKDEL LSLLESGPGQ  780
AGAAPVSGKR HIERLNYKKL HDETYGNVRT DSSDDEEWND TAGPRKRKKV TTQAPTMSPN  840
GDSSNVKNGM ITNNIKHDLD ENENTPKRTP RRNKNTPKRA HRKSKVEDTS NLSNKSQKGS  900
TQSASTSEQG GSSRSTYRKL GEAATQRLSK SFKENHYPDR SMKESLAREL GIMAKQVSKW  960
FENARHFWKV SVDKSAAGNG TPLPQTNGKQ LEKGDTPIGD SDQSGAQNKE LPRTNDPMTG  1020
SCSGDAKDGE LVTPKSSKRK AITPNNRKRX RKSDDPDPEN KTPETNRKGE SEEIAPLTDA  1080
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423431KRRKKRKKR
2425431RKKRKKR
3824828RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957946.10.0LOW QUALITY PROTEIN: homeobox protein HAT3.1-like
SwissprotQ049961e-135HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A498JR810.0A0A498JR81_MALDO; Uncharacterized protein
STRINGXP_008373077.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-122Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]