PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000246046
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 490aa    MW: 54431.1 Da    PI: 7.8866
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000246046genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.45.4e-40143219177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +Cqv+gC++dl+  k+yh+rh+vC++hsk++vv+v+g++qrfCqqCsrfh l efD+ krsCrrrLa+hn rrrk+q
  MDP0000246046 143 TCQVHGCNMDLTFSKDYHKRHRVCDAHSKTAVVIVNGIKQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNLRRRKPQ 219
                    6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.0E-31140205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.838141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-37142223IPR004333Transcription factor, SBP-box
PfamPF031102.1E-30144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDIPTDAFSR STRKALLELD NKTCFNFGKE SVDSVEFMDL GFPDINQGVE ILNGVIGNDS  60
SYNSVASPCC LISSSSSFGD GESGSKFSSP VTESNSMDSS MIALKLGGFA DSRGGQNSQH  120
SISRERSKRA GNGMRSSCYH APTCQVHGCN MDLTFSKDYH KRHRVCDAHS KTAVVIVNGI  180
KQRFCQQCSR FHLLAEFDDV KRSCRRRLAG HNLRRRKPQL DTLDCKPHKL IRSCEGNGYM  240
GTSFSKGTPF VFSDILPDGC ILYPEYEEAN LYGHVKSEDR STYGQSVTPI PNRQFIPKSF  300
RHLPGLGEQH APGIXSSGNE YSVFDTASTX EKAFETPYSS CALSLLSAQS HNLSSNSAGV  360
QVPSPLINQR AHRSFGQLNE KTLRVNSMEN CGRNRSYPFS MKSMGAXHME SIKISDSSHA  420
ADFQLHTDRA LHVSDCLSDK YCVSPERGTT FDLRQLSSHL QRVEHERNFF QVKQENGEFY  480
CFPTGVQATM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261442171184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.20991e-154bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389392.20.0squamosa promoter-binding-like protein 6
TrEMBLA0A498IE390.0A0A498IE39_MALDO; Uncharacterized protein
STRINGXP_008360085.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-36SBP family protein