PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000245344
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 667aa    MW: 73775.1 Da    PI: 7.0639
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000245344genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.66.9e-23263348186
       trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++ ev+aLi++    e+++  +g  k+  We +s km e g+ rs  +C+ekwen+nk+++++   ++kr s + + cpyf++le
  MDP0000245344 263 RWPEAEVQALITLWAAFEHKFHvAGTPKGRIWEXISVKMGEMGYVRSGRKCREKWENINKYFRRCMGPDSKR-SANAKLCPYFHELE 348
                    8*********************558999******************************************98.67778*******97 PP
2NF-YB172.64.3e-54459555197
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+ege
  MDP0000245344 459 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREMEGE 554
                    59*********************************************************************************************9 PP

          NF-YB  97 k 97 
                    +
  MDP0000245344 555 R 555
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015256321IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-4257320IPR009057Homeodomain-like
CDDcd122032.30E-18262327No hitNo description
PfamPF138371.7E-17262348No hitNo description
Gene3DG3DSA:1.10.20.105.3E-51454567IPR009072Histone-fold
SuperFamilySSF471138.54E-38462559IPR009072Histone-fold
PfamPF008082.6E-25465529IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-15493511No hitNo description
PROSITE patternPS006850496512IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-15512530No hitNo description
PRINTSPR006151.6E-15531549No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAELTGGRXL PNSDAFGEHI SPFPESTYDL VFENPTPAVP SPPQKLRPVR GSGGRSPMDS  60
GGKLEDVGPA KVGSGDXPVV YFRSVHRRDD DDDDRDKCLK AQGEEPMKRK RKTSVRSGNR  120
LEIERVEXFL ESLVKKVMEQ HEQMHKQLIE VIETNEKERL AREEAWKQQV LDRLKRDKEI  180
RAQETSRSLA LISFIQNYLG SENQVPQPSP SPVPEQAPAP AXAPIPLSVV PNYDHQRVEG  240
NGKADNGMQG DLMLVSSDAT NRRWPEAEVQ ALITLWAAFE HKFHVAGTPK GRIWEXISVK  300
MGEMGYVRSG RKCREKWENI NKYFRRCMGP DSKRSANAKL CPYFHELELL HKSGLVSFGN  360
GFNLTSNQNE AKIEKQAQKS EKRSDDGIQA SCALDNGDAR LKLSDINVRL AEMNQYSMGI  420
GRQTTATTNV NNVFNNNNVN PSSNANTTNG TADDNDCMVR EQDRFMPIAN VIRIMRKILP  480
PHAKISDDAK ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS KLGFDDYIEP  540
LTLYLHRYRE MEGERGSSTT SLMRSESLAK GAGTSSGTSS RAMDHHQYYG NSMAAAAAAF  600
HHQHGHGLFG YMQPSNVSVS NNNVNAASAA AACGSSTQLQ GGGSAAMPNG DHHQPHANGA  660
NGPSGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-57459550697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345793.20.0trihelix transcription factor GT-2-like
TrEMBLA0A498JZQ90.0A0A498JZQ9_MALDO; Uncharacterized protein
STRINGXP_009369197.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.26e-65nuclear factor Y, subunit B6