PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000244941
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 358aa    MW: 40004.6 Da    PI: 5.0684
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000244941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.2e-092602922355
                    SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yp++ee+ +L++ +gL++rq+ +WF N+R ++
  MDP0000244941 260 PYPTEEEKLQLSEMTGLDQRQINNWFINQRKRH 292
                    8*****************************885 PP
2ELK37.35.9e-13212233122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK +Ll+KYsgyL+sL++EF+
  MDP0000244941 212 ELKGMLLNKYSGYLSSLRKEFL 233
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-1068113IPR005540KNOX1
PfamPF037903.9E-1270111IPR005540KNOX1
SMARTSM012568.3E-23116167IPR005541KNOX2
PfamPF037912.4E-22119166IPR005541KNOX2
SMARTSM01188650125145IPR005539ELK domain
PROSITE profilePS5121310.772212232IPR005539ELK domain
SMARTSM011886.3E-7212233IPR005539ELK domain
PfamPF037899.8E-10212233IPR005539ELK domain
PROSITE profilePS5007112.665232295IPR001356Homeobox domain
SMARTSM003898.8E-13234299IPR001356Homeobox domain
SuperFamilySSF466893.81E-19234303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-26237297IPR009057Homeodomain-like
PfamPF059203.5E-16252291IPR008422Homeobox KN domain
CDDcd000862.32E-12258296No hitNo description
PROSITE patternPS000270270293IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEFYRMIAG VTSACSDDHV NVHQQVENMS TSTSSASCGG FHGGGHVVDD HNMLLFGTEG  60
LESDHMSDLI KSQIASHPRF SNLVAAYLEW QKVGAPAAEM KNLLEEIGRV SHPMSTCGEI  120
GADPELDEFM ESYIGVLHRF KEELSKPFDE ATTFLVNIQT QLSNLCKGTF PNTWDNHSDE  180
GVGGSEEELS CGEVEAAESQ EIGGAHSSGD RELKGMLLNK YSGYLSSLRK EFLKKRKKGK  240
LPKDARTTLL DWWTIHYRWP YPTEEEKLQL SEMTGLDQRQ INNWFINQRK RHWKPSEDMR  300
FALMEGVGGS IGGPVIFDTG FGTGNVHDAD TTYSWSVDAR GRAIFVGDKN CQLTRVHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227236LRKEFLKKRK
2233237KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370377.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP292e-93KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A498K7Y90.0A0A498K7Y9_MALDO; Uncharacterized protein
STRINGXP_008370377.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-74KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]