PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000244794

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 224aa MW: 25673.6 Da PI: 7.5015

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000244794	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1e-30	32	85	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LHe Fveav++LGG+ kAtPk+il++m+vkgL ++hvkSHLQ+YR+ MDP0000244794 32 PRLRWTSQLHELFVEAVQSLGGKYKATPKRILQMMSVKGLEISHVKSHLQMYRS 85 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.738	28	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-27	29	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	32	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.15E-14	32	87	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-8	33	84	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MHTNSITMSK KEIMKGSSHR IGVRKYHKSE LPRLRWTSQL HELFVEAVQS LGGKYKATPK 60 RILQMMSVKG LEISHVKSHL QMYRSFKDNN INIFSEDHSS SVFSAFPSQT HQRSSENYVR 120 YDELKDMENV MHSESDEEAA GKQHAIHQNT HTSELSRLSM DDQTCQLYGL CELSLSFDPV 180 TNRNQRERQF RPSADEHSSS ESTSTGNFSN IQVAGNHINL DLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	33	85	4	56	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008380176.1	1e-168	putative Myb family transcription factor At1g14600
TrEMBL	A0A498J3D5	3e-95	A0A498J3D5_MALDO; Uncharacterized protein
STRING	XP_008380176.1	1e-167	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000244794