PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000243965

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MIKC_MADS

Protein Properties

Length: 347aa MW: 39270.5 Da PI: 6.2912

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000243965	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s MDP0000243965 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	21.2	1.2e-08	76	144	10	78
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 +e+++ +lqqe+ L++++++ ++++R + + L+ s eL++ e+ L + l+++ ++K+ ll ++++ MDP0000243965 76 QEREQYELQQEIGGLQQQLQMAEEQIRIYEPDPLKITSTVELESCEKSLMDTLTRVMQRKEYLLSNHLS 144 45566789********************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.899	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.8E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-30	2	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.63E-36	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVFTRY INLPDQEREQ YELQQEIGGL QQQLQMAEEQ IRIYEPDPLK ITSTVELESC 120 EKSLMDTLTR VMQRKEYLLS NHLSSYDSSG IQQVLPGSFE NEVAGWLSSA GHNQAQIYDA 180 SAPLEHQLRN LSSTLYDPFS QGQSSNADPS TMGQCHVSVT NDSDGELPLW HQAYTTSSGH 240 HSTLIPPTLL PQYQMMFFYQ LRGEVLHKDP PLELQAAXAY VHRKVDRXKA MKTDADKHEP 300 AAMAAKACGL LLSSTELGQK XGQDKLELAR QVGNALWENA NYDRPLS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREQ YELQQEIGGL QQQLQMAEEQ IRIYEPDPLK ITSTVELESC  120
EKSLMDTLTR VMQRKEYLLS NHLSSYDSSG IQQVLPGSFE NEVAGWLSSA GHNQAQIYDA  180
SAPLEHQLRN LSSTLYDPFS QGQSSNADPS TMGQCHVSVT NDSDGELPLW HQAYTTSSGH  240
HSTLIPPTLL PQYQMMFFYQ LRGEVLHKDP PLELQAAXAY VHRKVDRXKA MKTDADKHEP  300
AAMAAKACGL LLSSTELGQK XGQDKLELAR QVGNALWENA NYDRPLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	8e-16	2	58	1	57	Myocyte-specific enhancer factor 2A
3mu6_B	8e-16	2	58	1	57	Myocyte-specific enhancer factor 2A
3mu6_C	8e-16	2	58	1	57	Myocyte-specific enhancer factor 2A
3mu6_D	8e-16	2	58	1	57	Myocyte-specific enhancer factor 2A
5f28_A	1e-15	1	87	1	88	MEF2C
5f28_B	1e-15	1	87	1	88	MEF2C
5f28_C	1e-15	1	87	1	88	MEF2C
5f28_D	1e-15	1	87	1	88	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951134.1	1e-180	agamous-like MADS-box protein AGL104 isoform X4
Swissprot	Q9LM46	4e-88	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A498I424	1e-178	A0A498I424_MALDO; Uncharacterized protein
STRING	XP_009347212.1	1e-177	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-72	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	MDP0000243965

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]