PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243664
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 522aa    MW: 58111.7 Da    PI: 9.8237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243664genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05108130123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  MDP0000243664 108 FVCEICNKGFQRDQNLQLHRRGH 130
                    89*******************88 PP
2zf-C2H211.90.0007185207123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +++
  MDP0000243664 185 WKCEKCSKKYAVQSDWKAHSKVC 207
                    58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-7107130No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.4E-5108130IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949108130IPR007087Zinc finger, C2H2
SMARTSM003550.017108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM0035599150180IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4173205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.74E-7180205No hitNo description
SMARTSM00355140185205IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDDVSSVLIS KTIKTLMRLR SSILFHLSYT IIKVSKFITQ PITTNKLNFQ MMSEDXRLVP  60
SIITGFXQEP DSSPNPNPNT NNQLKRKRNP DAEVIAMSPK SLMATNRFVC EICNKGFQRD  120
QNLQLHRRGH NLPWKLKQRS KTEVIRKKVY VCPEKTCVHH EPSRALGDLT GIKKHFSRKH  180
GEKKWKCEKC SKKYAVQSDW KAHSKVCGTR EYRCDCGTLF SRKDSFITHR AFCDALAAEQ  240
SARFCSAPTT NNINPSFMNG SIANNTHKPQ RIPHFIPMFQ PEFAGSDHLA ANNHLSSNAF  300
IPEMXQTASM DMFGSSSSSQ MQWLINNNKF VEESSFANAN SLSMSSPSLL RGVLKEDEES  360
KGSFSETIST TTNTSFYTNN NNKQNHHHHH QPMSATALLQ KAARMGSTTS NNNNPATTFN  420
DTTLNFNDMV NSTSSSSTQG ATIEDGSLFL SNKHLMMPAG AAAMTKQGTS EQSSLTRDFL  480
GVGGGDAIFG GGVPFFQQEL AKLASMSDLS QYTSTTTSSR HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34181252372Zinc finger protein JACKDAW
5b3h_F5e-34181252372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136147KQRSKTEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131600.0bud| fruit| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359126.20.0zinc finger protein BALDIBIS
RefseqXP_008359127.20.0zinc finger protein BALDIBIS
RefseqXP_017184323.20.0zinc finger protein BALDIBIS
TrEMBLA0A498IQF60.0A0A498IQF6_MALDO; Uncharacterized protein
STRINGXP_008359126.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-95C2H2-like zinc finger protein