PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243535
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 330aa    MW: 36515.4 Da    PI: 10.4684
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243535genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA231.1e-072191835
           GATA 18 gnktLCnaCGlyyrkkgl 35
                   g+ktLCnaCG++y++ +l
  MDP0000243535  2 GPKTLCNACGVRYKSGRL 19
                   89************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.106.1E-4217IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGPKTLCNAC GVRYKSGRLV PEYRSAASPT FVLTQHSNSH RKILELRCQN EASQQQPPEP  60
QKPPKPRKTA FSSCDSSSSP APAPHPAAAP KPILKSAFKR PNPAESTPEE TVPEKKKLXF  120
KTTTDASEQQ VIEAMQKIAS HIKTPAKQCL KMAFMTLAPN LHELSWTTWS RFTENSSSAE  180
ITSSSLAPHA RRYIQRNDFF MPSTALRPSS HHHYLHKLGV YNEVLTERFE GSVAMLVFMR  240
SSSCCYPVFA LPPTIQARHH HLPHRRQVVY HKASVHQLRS LLRSTSTSSP KDSVDNGGVT  300
PTEFKADSTV SRAATMGKLT GPLARPGSLP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117912e-72fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-25GATA transcription factor 4