PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243533
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 361aa    MW: 40325.3 Da    PI: 8.0798
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243533genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.5e-2580124145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  MDP0000243533  80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 124
                    79****************************************985 PP
2QLQ55.61.6e-191545232
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
                   +FTa+Q+q+L++Q+l++Ky+a+++P+P +L+
  MDP0000243533 15 PFTATQWQELEHQALIFKYMASGVPIPNDLV 45
                   9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-101450IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.7E-141545IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.5241550IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32580124IPR014977WRC domain
PfamPF088793.3E-2181123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMNGNPSSAA RNRYPFTATQ WQELEHQALI FKYMASGVPI PNDLVYSFKR RLDSSISSRL  60
FPHHPMGWGC YEMGFGRKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  120
PVEVSSSSSA LSSPTAASTA TAEHLSSPSA TSPSSSLHRN LCKTSSSSYT LTPLSSSIST  180
QQTNQSNSSL YPFLNYPYSS SSSSSTPQLF LNSASYSDKD YRYFQGAKEG VDELAFFPDS  240
SANERNLLMN SYRGYSPTQQ SQEDQQQHCF VWGTDFKSVK TEKESAAAES QKSLHHFFGE  300
WQQPAKSSGD TWLDLASNSG GPNDDISWSV NCLHERTLIK HPFVIHEKGF DDAGTSPSSD  360
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700700.0KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391391.20.0LOW QUALITY PROTEIN: growth-regulating factor 5
TrEMBLA0A498J2A70.0A0A498J2A7_MALDO; Uncharacterized protein
STRINGXP_008391391.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-61growth-regulating factor 5