PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000243375

Common Name

AP2D21, LOC103440753

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ERF

Protein Properties

Length: 179aa MW: 20341.2 Da PI: 8.827

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000243375	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.1e-18	7	55	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + MDP0000243375 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69****9.******8.....334********************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.19E-35	6	66	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.7E-34	7	64	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-41	7	70	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-11	7	56	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.14	7	64	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.79E-21	7	66	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-11	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNAS QSSASKLLSA TLTAKLHRCY MASLQMTKTS LQEPKKPQAL ASSGAKMPDI 120 KPEIHQPVAE ENWVVREVKV ESSSQQFKPL EDDHIEQMIE ELLHYGSIEL CSVLPPQAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-18	8	71	6	70	ATERF1
3gcc_A	5e-18	8	71	6	70	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11479	0.0	cell culture\| fruit\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00526	DAP	Transfer from AT5G25190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732445	0.0	GU732445.1 Malus x domestica AP2 domain class transcription factor (AP2D21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377674.1	1e-132	ethylene-responsive transcription factor ERF003
Swissprot	Q94AW5	4e-83	ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBL	D5L105	1e-131	D5L105_MALDO; AP2 domain class transcription factor
STRING	XP_008377674.1	1e-132	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1106	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	1e-62	ERF family protein

Link Out ? help Back to Top
Phytozome	MDP0000243375
Entrez Gene	103440753

Publications ? help Back to Top
Tacken E, et al. The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening. Plant Physiol., 2010. 153(1): p. 294-305 [PMID:20237022] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]