PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243351
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 607aa    MW: 66982.8 Da    PI: 4.9607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.61.1e-9331259275374
           GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                    ++   a++l+++ sPi+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp        R++        g+g+    sk+el+et++rLa fA 
  MDP0000243351 312 EDYGIAVRLLNQFSPIPKFVHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWP--------RSQ--------GIGE----SKQELNETRDRLAGFAG 387
                    45557889*******************************************9........444........7***....9**************** PP

           GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                    +l++pfef++ v++rled+++++L+vk++E++aVn+v+qlh++l + +    + +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa
  MDP0000243351 388 ALNLPFEFHP-VVDRLEDVRVWMLHVKEHESVAVNCVFQLHKTLYDMTGG--ALRDFLGLIRSTNPTIVLMAEQEAEHNEARLETRVSNSLKYYSA 480
                    **********.7*******************************9554443..4589**************************************** PP

           GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgs 357
                    +fds+ ++lp  s++rikvE++ ++rei+n+vaceg++r erhe++ekWr+++e+ GF+ + ++e+++ q + ll++++++ y v+++      g+
  MDP0000243351 481 IFDSIGSSLPLGSQARIKVEEM-FAREIRNIVACEGSDRLERHESFEKWRKWMEQGGFRCAGITEREMLQSQFLLKMYANESYAVKKQeqdgaAGA 575
                    **********************.********************************************************999****7767777899 PP

           GRAS 358 lvlgWkdrpLvsvSaWr 374
                    l+l W+drpL++vSaW+
  MDP0000243351 576 LTLSWMDRPLYTVSAWT 592
                    99**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.412184567IPR005202Transcription factor GRAS
PfamPF035144.0E-91312592IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KVGSCSLKQS IRLPPLATTG PVSATAEFVE AGKENRDQFS GEKKRGKRFA  120
EPVDDDESCR NRAKRKRGCG DNGGGDEGGG GLSLGQLGGG NFWFQPGFQL PPPTTQLPFS  180
LTCSGDDERV CYVPGEAISQ PLPLSNSPWL DSIVTEITDL GKKDGGGEAS RGLVWEESAA  240
SSTSSESQSL ALSVNESASE HEAGNGTRNP YVPHGGAWVV AEEDDDDDDE SEAEHIGFEL  300
INAPREFDRR DEDYGIAVRL LNQFSPIPKF VHFTSNEILL RAFEGKDRVH IIDFDIKQGL  360
QWPRSQGIGE SKQELNETRD RLAGFAGALN LPFEFHPVVD RLEDVRVWML HVKEHESVAV  420
NCVFQLHKTL YDMTGGALRD FLGLIRSTNP TIVLMAEQEA EHNEARLETR VSNSLKYYSA  480
IFDSIGSSLP LGSQARIKVE EMFAREIRNI VACEGSDRLE RHESFEKWRK WMEQGGFRCA  540
GITEREMLQS QFLLKMYANE SYAVKKQEQD GAAGALTLSW MDRPLYTVSA WTTVDVAGSS  600
SSFSKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4931759297378Protein SCARECROW
5b3h_D5e-4931759297378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828642.10.0PREDICTED: scarecrow-like protein 28 isoform X1
SwissprotQ9CAN31e-132SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2I4FAG50.0A0A2I4FAG5_JUGRE; scarecrow-like protein 28 isoform X1
STRINGcassava4.1_003118m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-134GRAS family protein