PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000243257
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 496aa    MW: 54317.7 Da    PI: 8.6668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000243257genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.9e-12110136127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C +++rtG C yG++C+F+H++
  MDP0000243257 110 PGEPDCIYYLRTGLCGYGSNCRFNHPK 136
                    5789*********************96 PP
2zf-CCCH38.32.2e-12154178327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C +f++tGtCkyG++CkF+H++
  MDP0000243257 154 QPDCGYFLKTGTCKYGSTCKFHHPR 178
                    789********************96 PP
3zf-CCCH37.93e-12201223527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C++++rtG Ck+G+ CkF+H++
  MDP0000243257 201 SCPYYMRTGSCKFGPACKFHHPQ 223
                    6********************97 PP
4zf-CCCH36.86.7e-12339364227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++Cr+f+ tGtCkyG  Ck++H++
  MDP0000243257 339 DQPECRYFMNTGTCKYGXDCKYHHPK 364
                    689*********************96 PP
5zf-CCCH31.52.9e-10381406126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C++f  +G+CkyG++C+F H+
  MDP0000243257 381 PGQPACSYFIMYGICKYGPTCRFDHP 406
                    57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-6109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526109137IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5114136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4115134IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793151179IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10154178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5157178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6195224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371197224IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5198223IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10200223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5201222IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826337365IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6339366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5343364IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5380407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77380408IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6382406IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5384409IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
PPHSLLILIW VLFFCKFVRF GRWVAAISSE SLKLFMSLVG EAEKSRGKQH KGRVHANSVV  60
PPMPDARQAQ KNAVPNQSDG NVEDAFWRLT INDNQDRGGV AQANSYPDRP GEPDCIYYLR  120
TGLCGYGSNC RFNHPKYASQ GNQYNGELPE RVGQPDCGYF LKTGTCKYGS TCKFHHPRDR  180
RGAGPVLFNI LGLPMHQEEK SCPYYMRTGS CKFGPACKFH HPQPQSVGTV LPAFGSASSA  240
VVPTSGVPYV GGVSAWSFPR APYVSGQRLQ TPQSYMPVVL PPQGIVPAHG WNTYVGNMSP  300
VSSTGILGSN LTYNSRTQGE SASNGQVHLS SPXLPQRPDQ PECRYFMNTG TCKYGXDCKY  360
HHPKERITES ATTSLGLPSR PGQPACSYFI MYGICKYGPT CRFDHPYMEQ SASYNFGMQA  420
MPVLDSSLLS YPRGWPVAHG LETSPSIPSK SPDGVKKPMS NNYQNSNTKI SEDSPEQVGS  480
LPASPSSPEP VQEQSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113131e-162bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353591.20.0zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-113C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A498HF440.0A0A498HF44_MALDO; Uncharacterized protein
STRINGXP_008342144.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]