PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241245
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 389aa    MW: 44157.7 Da    PI: 9.561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241245genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-15187273190
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    ffkv ++ +++  g l lp  f+++h  +  ++ + tl+ ++g +W vk+ ++  + ++ + +GW+ Fv++ngL+ gD++vF l+++  f
  MDP0000241245 187 FFKVPLRFSYTHYGYLALPVMFVKAHLTV--RPSDATLRVSDGTTWPVKVGFDVAG-HCRFLSGWRLFVNDNGLEIGDICVFVLINKIXF 273
                    666666677778899***********766..55689999999********996665.444556*******************99876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-19182275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-21182276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-17187281No hitNo description
PfamPF023622.1E-13187277IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971187281IPR003340B3 DNA binding domain
SMARTSM010196.7E-10188283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLNTHQTKDG SESLTISPFR XEALKRKKKM VMARSNAVRA PTFFKVLVDD FSTQLQIPLA  60
FLVHFDGKVP QETHLQTPGG TWPGRNGCKK EFVMVIRKRD RPHEEAHGNA VHRKTPRNHG  120
KQNVDNQGQK GLAYGTGTSX ATHANIQIKD EVTDDREYEL SMHPRATRTE KAVALQKGND  180
FEYRNPFFKV PLRFSYTHYG YLALPVMFVK AHLTVRPSDA TLRVSDGTTW PVKVGFDVAG  240
HCRFLSGWRL FVNDNGLEIG DICVFVLINK IXFLFEVVLH RKIGAVSPTL SPGKQSVSNL  300
LCCEFLLHYV CPLHNTDMSY CFXFSFSGRQ TAAEDQFELR NQDRSIIYEA SSDENASCKR  360
RPSISITRPV AYMYILSFVV ILPPVNWLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376506.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A498I0340.0A0A498I034_MALDO; Uncharacterized protein
STRINGXP_009376506.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-13related to vernalization1 1