PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241111
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 326aa    MW: 37016.4 Da    PI: 5.4198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.7e-1356103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
    MDP0000241111  56 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 103
                      89******************************99************97 PP
2Myb_DNA-binding47.93.2e-15109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E+ + ++++  lG++ W++Ia++++ gRt++++k++w++
    MDP0000241111 109 RGGFTEAEENQMIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 152
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2047106IPR009057Homeodomain-like
PROSITE profilePS5129413.51751103IPR017930Myb domain
SuperFamilySSF466899.54E-2853150IPR009057Homeodomain-like
SMARTSM007176.3E-655105IPR001005SANT/Myb domain
PfamPF002498.0E-1156103IPR001005SANT/Myb domain
CDDcd001671.25E-458103No hitNo description
PROSITE profilePS5129424.011104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-24107159IPR009057Homeodomain-like
SMARTSM007172.7E-13108156IPR001005SANT/Myb domain
PfamPF002491.6E-13109152IPR001005SANT/Myb domain
CDDcd001671.19E-9112152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDTTLVKRLC XIWGSSKLHA PLGPWHGNII NMSTCREIEF VTMGRLPCCD KVGLKRGPWT  60
IEEDHKLMNF ILNNGIHCWR MVPKLAGLLR CGKSCRLRWI NYLRPDLKRG GFTEAEENQM  120
IQLHSCLGNR WSKIASHFPG RTDNEIKNHW NTRIKKRLKH LGVDPLTHKP IEEKEHIEEN  180
KDTITQQSNI TSSSSEEGLE ESRGTGLEAK LLEDSNGNKG FPESDEKSQN EVQLTTLDDA  240
NDISENYEVF CGSLDLGTLM LNQGFPNTSS MSNSYSTSFS VEDSNNASIS IGETMQENCL  300
QQWVDSVDSM LSWDGFNIFG QDLFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27541585108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183968.10.0myb-related protein 315-like
TrEMBLA0A498J6250.0A0A498J625_MALDO; Uncharacterized protein
STRINGXP_008379158.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-80myb domain protein 40