PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241055
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 559aa    MW: 63691.2 Da    PI: 8.0953
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241055genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32315369155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+
  MDP0000241055 315 KERLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 369
                    68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121656.1E-659134IPR021998Alfin
SuperFamilySSF579032.21E-19175243IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-18180236IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.223184236IPR019787Zinc finger, PHD-finger
CDDcd156134.98E-30186236No hitNo description
SMARTSM002491.0E-9186234IPR001965Zinc finger, PHD-type
PROSITE patternPS013590187233IPR019786Zinc finger, PHD-type, conserved site
PfamPF006282.4E-10187234IPR019787Zinc finger, PHD-finger
PROSITE profilePS5129414.252312372IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-30313370IPR009057Homeodomain-like
SuperFamilySSF466893.23E-17314369IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-26315370IPR006447Myb domain, plants
PfamPF002491.1E-8317368IPR001005SANT/Myb domain
PfamPF143791.3E-8401440IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEMASSPRTV EEIFKDYSAR RTAVVRALTY DVDEFYGLCD PEKENLCLYG HPNETWEVTL  60
PAEEVPPELP EPALGINFAR DGMNRKDWLS LVAVHSDSWL LSVAFYFGAR LNRSERKRLF  120
SLINDLPTVF EVVTERKPVK EKPSVDSGSK SRGSTKRSGD GLVKSTPKLP PDESFEEDDD  180
EHSETLCGSC GGNYNADEFW IGCDICEKWF HGKCVKITPA KAENIKQYKC PSCSLKRGRH  240
FIRRLETASK RSTLHLVHIV FCLXLLVLTT VGASCTCYSF CCNRVPPLHR AQEHLLIFDE  300
FEMRLSRSAS SAANKERLRW TQELHDRFVE AVTKLGGPDR ATPKGILKAM SVSGLTIYHI  360
KSHLQKYRIS KFIPESTSKG KLQKKNISEM LPNFGTTSAA QLNEAFKIMQ VQVNRRLSDQ  420
HEVQKSLKQK FEAQGRFLER YSAEHHXTNK NRPILITKPK KAPLSQTLLP SLCDDSESNA  480
KDFXSDSEPD RSETETSAEQ FRTXKKKLRL HHHQNDHNVQ LALNSEFCYI PHEDDHIRFP  540
WNFAACSSPL PLVVXSCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvl_A1e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_A1e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_B1e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_C1e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_E1e-6051391135PHD finger protein ALFIN-LIKE 2
5y21_A1e-6051391135PHD finger protein ALFIN-LIKE 2
5y21_B1e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_A1e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_B1e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_C1e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_E1e-6051391135PHD finger protein ALFIN-LIKE 2
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.41400.0bud| cell culture| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IIE20.0A0A498IIE2_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-46G2-like family protein