PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000241048
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 555aa    MW: 61898.3 Da    PI: 6.2779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000241048genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.88.8e-5227850013256
           GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108
                    +++d++ +++lL+++++++sp gd +qR+a++f+++L+arla+++s++yk + +++ts    ++ l+a++l+  +sP+ k+s++++N +I++ +e+
  MDP0000241048 278 KTDDHRTVNELLKKVRQHSSPFGDGTQRIAHCFANGLEARLAGTGSQIYKGIVSKRTS---AADILKAYHLYLVASPFKKMSNFVTNVTIMNLAEK 370
                    578999**********************************************999999...9********************************** PP

           GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                    ++r+H+iDf+                   gpp++RiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ ++k++e+++leeL+++++E+l
  MDP0000241048 371 STRLHVIDFG-------------------GPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAEKFNVPFEYNA-IVKKWETITLEELKIDKDEVL 446
                    *********5...................9**************9*****************************.7******************** PP

           GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                    +Vn+ ++ ++lldesvs++s r+ vL+l+++++P+++++   +  +n++ F++r
  MDP0000241048 447 VVNFLYRGKNLLDESVSVDSVRNMVLDLIRRINPDIFIHXVVNGAYNAPFFVTR 500
                    ***************************************************987 PP
2GRAS21.72.2e-07499553320374
           GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++aG+ ++p++ + +k +   ++  + + + ++e+s +l++gWk+r+ +++SaW+
  MDP0000241048 499 TRAGLVQIPFDRELVKAVAKKVSSLYHKDFVIDEDSRWLLQGWKGRTXFALSAWK 553
                    689*************9999999999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.648239555IPR005202Transcription factor GRAS
PfamPF035143.0E-49278500IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDPRRRGFSD SFNGVQLGNQ PLPILSHPTV VAGSRFDNVV LKYINQMLME EDMEDKICML  60
QESLELQAAE KSFYEVFGKK YPPSPELFRR YASQYGESPA ESSSGTWSNY ITSSCNSGGY  120
FGDTTSIQSP DGYSSQLQGL PSYSISQSFN GSSTRVSSLD GLGVDEASRF LLGETNLVVE  180
LEANGMSVHT PKVGAAASYV KVERTDEGEY SSGGSRGRKN LYREDEDVEE KRSSKQAAVS  240
SESPLQSEMF DVVLLCSIGE GQERLESLRE ALQDGMSKTD DHRTVNELLK KVRQHSSPFG  300
DGTQRIAHCF ANGLEARLAG TGSQIYKGIV SKRTSAADIL KAYHLYLVAS PFKKMSNFVT  360
NVTIMNLAEK STRLHVIDFG GPPKVRITGI EFPQPGFRPA ERVEETGRRL AAYAEKFNVP  420
FEYNAIVKKW ETITLEELKI DKDEVLVVNF LYRGKNLLDE SVSVDSVRNM VLDLIRRINP  480
DIFIHXVVNG AYNAPFFVTR AGLVQIPFDR ELVKAVAKKV SSLYHKDFVI DEDSRWLLQG  540
WKGRTXFALS AWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2127948232245Protein SCARECROW
5b3h_A7e-2127948231244Protein SCARECROW
5b3h_D7e-2127948231244Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500498.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-132SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A498K9E30.0A0A498K9E3_MALDO; Uncharacterized protein
STRINGXP_008369982.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-133GRAS family protein