PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000240626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 647aa    MW: 73326 Da    PI: 7.2659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000240626genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-103255326
                   S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                   + +C +++r+G+Ck+G+ CkF H+
  MDP0000240626 32 QNICTHHSRYGICKFGPACKFDHP 55
                   679********************9 PP

2zf-CCCH36.67.3e-12363385527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C+++++tG Ck+G++CkF+H++
  MDP0000240626 363 DCSYYLKTGNCKFGSNCKFNHPR 385
                    7********************96 PP

3zf-CCCH36.58.1e-12443467226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C++++rtGtCky  +CkF+H+
  MDP0000240626 443 GEKDCPYYMRTGTCKYETNCKFNHP 467
                    7889********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-52755IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1262957IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-42956IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-83255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6358385IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263358386IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9362385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5364383IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6441468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112441469IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9443467IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6444468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5447466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.286554582IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4554581IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAKSVERERS YCTAAAAPIA LSDKGLPLRP DQNICTHHSR YGICKFGPAC KFDHPLHIPS  60
STTSGPDPQL PFSDSATTNG AGMAGSRSRT DVTSQPQPVH FSYRRRRIRR RHQHKTMFFS  120
AARIALPVSV SVLVLIYQYF KSGRKSEFSE GIEVPLNPTT SVPSPAPSDL EREILDWIRT  180
XDPDXLNKIR NLDPAFLDVI RNFDPAFSSE ISERVDGPLN PPSVSSPAPS DLDSEILDWI  240
RELHPAVLDE LQSDPAFLDE IRXFDPSIID QIXILSLKEK EDKEEEEKRR KCEKEKEEEE  300
KRRKCEKEKE EEEKRRECEK ENEKERERES GGGGNENGGE VDKKVVEESS RRNQYPLRPE  360
AKDCSYYLKT GNCKFGSNCK FNHPRIRKNK QVSKDKAKLR EELEKQQDQA ESXYYISPGR  420
RVGVPSVAPA LELNFSGLPI RPGEKDCPYY MRTGTCKYET NCKFNHPDPT AAGESRPQSA  480
YGNGRPASSX GLPKSQDXYS ETTEWNGYQA PAYLPHRGMP APPPPPYVMN NSVTETNYYG  540
QYAQQKQAEE XPERPGXPVC FYFAQTGDCI NKSNCQYHHP KNHTPATPSC TLNDRGLPLR  600
PQTGYGHLEV EVKLMPQFRN SLSNAFCTKC QLEQWILVTK DVKSLCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288303RRKCEKEKEEEEKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.44751e-146bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948470.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A498I3J31e-114A0A498I3J3_MALDO; Uncharacterized protein
TrEMBLM5WWY51e-115M5WWY5_PRUPE; Uncharacterized protein
STRINGXP_008392972.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2758123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-66C3H family protein