PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000240626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 647aa MW: 73326 Da PI: 7.2659 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.5e-10 | 32 | 55 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ MDP0000240626 32 QNICTHHSRYGICKFGPACKFDHP 55 679********************9 PP | |||||||
2 | zf-CCCH | 36.6 | 7.3e-12 | 363 | 385 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++++tG Ck+G++CkF+H++ MDP0000240626 363 DCSYYLKTGNCKFGSNCKFNHPR 385 7********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.1e-12 | 443 | 467 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtGtCky +CkF+H+ MDP0000240626 443 GEKDCPYYMRTGTCKYETNCKFNHP 467 7889********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.53E-5 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-4 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-8 | 32 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 358 | 385 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-6 | 358 | 385 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 358 | 386 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 362 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 364 | 383 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 441 | 468 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 441 | 469 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 443 | 467 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 444 | 468 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 447 | 466 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.286 | 554 | 582 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-4 | 554 | 581 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MAKSVERERS YCTAAAAPIA LSDKGLPLRP DQNICTHHSR YGICKFGPAC KFDHPLHIPS 60 STTSGPDPQL PFSDSATTNG AGMAGSRSRT DVTSQPQPVH FSYRRRRIRR RHQHKTMFFS 120 AARIALPVSV SVLVLIYQYF KSGRKSEFSE GIEVPLNPTT SVPSPAPSDL EREILDWIRT 180 XDPDXLNKIR NLDPAFLDVI RNFDPAFSSE ISERVDGPLN PPSVSSPAPS DLDSEILDWI 240 RELHPAVLDE LQSDPAFLDE IRXFDPSIID QIXILSLKEK EDKEEEEKRR KCEKEKEEEE 300 KRRKCEKEKE EEEKRRECEK ENEKERERES GGGGNENGGE VDKKVVEESS RRNQYPLRPE 360 AKDCSYYLKT GNCKFGSNCK FNHPRIRKNK QVSKDKAKLR EELEKQQDQA ESXYYISPGR 420 RVGVPSVAPA LELNFSGLPI RPGEKDCPYY MRTGTCKYET NCKFNHPDPT AAGESRPQSA 480 YGNGRPASSX GLPKSQDXYS ETTEWNGYQA PAYLPHRGMP APPPPPYVMN NSVTETNYYG 540 QYAQQKQAEE XPERPGXPVC FYFAQTGDCI NKSNCQYHHP KNHTPATPSC TLNDRGLPLR 600 PQTGYGHLEV EVKLMPQFRN SLSNAFCTKC QLEQWILVTK DVKSLCC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 303 | RRKCEKEKEEEEKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.4475 | 1e-146 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028948470.1 | 0.0 | zinc finger CCCH domain-containing protein 43-like isoform X1 | ||||
TrEMBL | A0A498I3J3 | 1e-114 | A0A498I3J3_MALDO; Uncharacterized protein | ||||
TrEMBL | M5WWY5 | 1e-115 | M5WWY5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008392972.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27581 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 4e-66 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000240626 |