PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000239820

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 275aa MW: 29933.7 Da PI: 8.5013

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000239820	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.9	8.7e-30	27	128	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+p + p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q++ MDP0000239820 27 SCNGCRVLRKGCSDSCMLRPSLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAA 122 6*********************************************************************************************** PP DUF260 92 aelall 97 +e++l MDP0000239820 123 VETVLX 128 998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	28	No hit	No description
PROSITE profile	PS50891	19.41	26	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-25	27	126	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKTNLSADLS PIPPPPRQWL TWIIIMSCNG CRVLRKGCSD SCMLRPSLQW IETPEAQGHA 60 TVFVAKFFGR AGLMSFISAV PDSQRPVLFQ SLLFEACGRT INPVNGAVGL LWTGNWHVCQ 120 AAVETVLXGG TLRPIPELLG GASTPDEASE ADVGGVTIST DMWRLRDPSH NSGSSSRFTS 180 SRSARASSPK RKRSAASDES STKLLQPQQH ADLDLRLTPT PSFKPKPKPE TRRPGTPSMN 240 SDESGVSTCF ESGFEDQHPY SYAVGTERKL LNLFP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5453	0.0	bud\| flower\| fruit\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338422.2	0.0	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-83	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A498I0N0	0.0	A0A498I0N0_MALDO; Uncharacterized protein
STRING	XP_008338422.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	9e-78	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	MDP0000239820

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]