PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000239684
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 690aa    MW: 75611.4 Da    PI: 6.1858
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000239684genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-094274641954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  MDP0000239684 427 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 464
                    664459******************************88 PP

2BELL128.81.9e-41289360172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+gsakpYt++Al++iSrhFrcL+dai++qi
  MDP0000239684 289 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGIGSAKPYTAVALQTISRHFRCLRDAITGQI 360
                    689********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-58208358IPR006563POX domain
PfamPF075266.2E-49214357IPR006563POX domain
PROSITE profilePS5007112.05405468IPR001356Homeobox domain
SMARTSM003893.2E-9408472IPR001356Homeobox domain
CDDcd000865.03E-13408469No hitNo description
SuperFamilySSF466895.13E-17409475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28411474IPR009057Homeodomain-like
PfamPF059202.7E-17425464IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MSSYYTGSNN QKDATPMLYL REPLPSSYPE APFVSGNMMM YMNPGSYSDA LAGSSQQQNN  60
CIEGGSSVGG SDSNQQQHDV LSHLGGTHIG EQGFSPWREG RNEMLVTHPM GSSSGILHGG  120
QNLQGQGLSL SLSTQIPSGM QMPSISYRNT NMGFASFLSP NASVSSEGDG RNGSFRDEQP  180
RNVEYLQSGF PGGNPDSSKG DLSPYGMSSM ARTISHNKYL KAAQQLLDEV VNVQKALKQH  240
DREKNQSTHD HQKSFKEGDD GSKNDLESGV STNPQELASN STCELSHAEK QELQSKLTKL  300
LSMLDEVDRR YKQYYHQMQI VVSSFDVIAG IGSAKPYTAV ALQTISRHFR CLRDAITGQI  360
RATRKSLGEQ GASGSMKGVG ISRLRYVDQH LRQQRALQQL GMMQQHAWRP QRGLPESSVS  420
ILRAWLFEHF LHPYPKDSDK ILLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEEAGD  480
AEMDSNSSSE NTPQTKKGDN TGTMEDGVED MQPSPSSTAT EKCGTGQFMD SKSDHFHDVE  540
MAGSTGYANF QNVTRHEAEA EAEYGLVKLR EGQRPGMDDS SLFSDANVQT DRNSERFTAA  600
AAAYHMPELG RFGSGSGVSL TLGLQHCDGG SSLPISSGTH HGFVSVRGDD LYNPAASSVG  660
SETADFECLD SGNQQQHRFS SSHLLHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16414471158Homeobox protein Meis1
4xrs_B1e-16414471158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.133211e-150bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382306.10.0BEL1-like homeodomain protein 6
TrEMBLA0A498J1C40.0A0A498J1C4_MALDO; Uncharacterized protein
STRINGXP_008382306.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-122BEL1-like homeodomain 6