PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000239684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TALE | ||||||||
Protein Properties | Length: 690aa MW: 75611.4 Da PI: 6.1858 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.5 | 5.5e-09 | 427 | 464 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + MDP0000239684 427 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 464 664459******************************88 PP | |||||||
2 | BELL | 128.8 | 1.9e-41 | 289 | 360 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+gsakpYt++Al++iSrhFrcL+dai++qi MDP0000239684 289 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGIGSAKPYTAVALQTISRHFRCLRDAITGQI 360 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.5E-58 | 208 | 358 | IPR006563 | POX domain |
Pfam | PF07526 | 6.2E-49 | 214 | 357 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 405 | 468 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-9 | 408 | 472 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.03E-13 | 408 | 469 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 409 | 475 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 411 | 474 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-17 | 425 | 464 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MSSYYTGSNN QKDATPMLYL REPLPSSYPE APFVSGNMMM YMNPGSYSDA LAGSSQQQNN 60 CIEGGSSVGG SDSNQQQHDV LSHLGGTHIG EQGFSPWREG RNEMLVTHPM GSSSGILHGG 120 QNLQGQGLSL SLSTQIPSGM QMPSISYRNT NMGFASFLSP NASVSSEGDG RNGSFRDEQP 180 RNVEYLQSGF PGGNPDSSKG DLSPYGMSSM ARTISHNKYL KAAQQLLDEV VNVQKALKQH 240 DREKNQSTHD HQKSFKEGDD GSKNDLESGV STNPQELASN STCELSHAEK QELQSKLTKL 300 LSMLDEVDRR YKQYYHQMQI VVSSFDVIAG IGSAKPYTAV ALQTISRHFR CLRDAITGQI 360 RATRKSLGEQ GASGSMKGVG ISRLRYVDQH LRQQRALQQL GMMQQHAWRP QRGLPESSVS 420 ILRAWLFEHF LHPYPKDSDK ILLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEEAGD 480 AEMDSNSSSE NTPQTKKGDN TGTMEDGVED MQPSPSSTAT EKCGTGQFMD SKSDHFHDVE 540 MAGSTGYANF QNVTRHEAEA EAEYGLVKLR EGQRPGMDDS SLFSDANVQT DRNSERFTAA 600 AAAYHMPELG RFGSGSGVSL TLGLQHCDGG SSLPISSGTH HGFVSVRGDD LYNPAASSVG 660 SETADFECLD SGNQQQHRFS SSHLLHDFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 414 | 471 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 414 | 471 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13321 | 1e-150 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008382306.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A498J1C4 | 0.0 | A0A498J1C4_MALDO; Uncharacterized protein | ||||
STRING | XP_008382306.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-122 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000239684 |