PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000238771
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 494aa    MW: 54798.6 Da    PI: 9.5193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000238771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.4e-15161213254
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    rk+ +++k+q   Lee F+++++++ +++  LAk+l+L   qV vWFqNr+a 
  MDP0000238771 161 RKKLRLSKSQSAFLEESFKEHNTLNPKQKLVLAKQLNLRPHQVEVWFQNRKAS 213
                    778899*********************************************95 PP
2HD-ZIP_I/II75.59.2e-25161234174
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                    +kk+rlsk q+++LEesF+e+++L+p++K  la++L+l+p+qv+vWFqnr+A   +k+     ++ +r+++al+
  MDP0000238771 161 RKKLRLSKSQSAFLEESFKEHNTLNPKQKLVLAKQLNLRPHQVEVWFQNRKASSALKEKWATTNSSRRTLEALQ 234
                    69****************************************************99999888888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-15149210IPR009057Homeodomain-like
SuperFamilySSF466892.48E-14155212IPR009057Homeodomain-like
PROSITE profilePS5007114.317157217IPR001356Homeobox domain
SMARTSM003893.9E-12159221IPR001356Homeobox domain
PfamPF000466.2E-13161213IPR001356Homeobox domain
CDDcd000869.56E-12161212No hitNo description
Gene3DG3DSA:2.130.10.103.8E-36283447IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.05E-36286437IPR017986WD40-repeat-containing domain
SMARTSM003207.2E-4306345IPR001680WD40 repeat
PROSITE profilePS500828.938313354IPR001680WD40 repeat
PROSITE profilePS5029426.551313440IPR017986WD40-repeat-containing domain
PfamPF004000.11313343IPR001680WD40 repeat
SMARTSM003203.2E-9348387IPR001680WD40 repeat
PfamPF004003.6E-5350387IPR001680WD40 repeat
PROSITE profilePS5008212.079355389IPR001680WD40 repeat
PROSITE patternPS006780374388IPR019775WD40 repeat, conserved site
SMARTSM003201.4E-6390431IPR001680WD40 repeat
PfamPF004002.0E-4393431IPR001680WD40 repeat
PROSITE profilePS5008213.583397433IPR001680WD40 repeat
PROSITE patternPS006780418432IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGGNMDIRFC MGMGTAAFGA VRSDESNRKS TYEVYDQEER RRSRISSDPP LQLNLLPSAP  60
VPRSHFSSQL RFPWLTNNLD VSDPAGSSDG PGIGLDVNRM PGVLASAKEA EDVAAQLSSL  120
NSTVSSFQMD FGMRNGGRLS KRDFDVDVDK ASDDEENGSA RKKLRLSKSQ SAFLEESFKE  180
HNTLNPKQKL VLAKQLNLRP HQVEVWFQNR KASSALKEKW ATTNSSRRTL EALQSLRGEN  240
PSLPQTATSS SCSNSRSPQS LPLKKNYRCV PSLQQFYSGG LFAVSSDGSF ITCKCDESSK  300
IVDSSNASIR STIEGDSDKI TALAFSPDNR LFFSTGHSRQ IKIEDLFTLK CVRSWKGHEG  360
PVMGMSCHPS GGLLATAEAD RKVIVWDVDG IFCTHYFKGH KGVVSSVLFH PDPTKQLLFS  420
ASNDTNVHVW DLKFFALNHT DLDLLQTKER RVTDRSSQDL QRTLPTESKS KAEKQRKSTW  480
LTLQKQGIKG SLKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6hqa_B4e-15315432451566Subunit (90 kDa) of TFIID and SAGA complexes
6hqa_C4e-15315432451566Subunit (90 kDa) of TFIID and SAGA complexes
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.264470.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008347593.11e-150(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-34homeobox from Arabidopsis thaliana