PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000238683

Common Name

TCP7

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 287aa MW: 30373.2 Da PI: 9.2582

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000238683	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.1	5.3e-37	36	156	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++n ss+ MDP0000238683 36 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGNTSSSapsttssdh 130 78**************************************************************99999776.33333333333333344445556 PP TCP 89 .........................k 89 + MDP0000238683 131 kpqllxptpfilgkrvrgslddpenN 156 77888888777775554443322220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-35	42	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSNSEAPNNE LTNGGGGAGA MVEQTSQRPS SNGVLAVKKP PSKDRHSKVD GRGRRIRMPI 60 ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGNTSS 120 SAPSTTSSDH KPQLLXPTPF ILGKRVRGSL DDPENNHSHN HNHDASAAKD PSDNHANNDG 180 AVSVVGHSMA SMLGPNAGGP GGFWAPHFGQ VWSFAATPPP ELMAQSALSH QQQQHQHHQQ 240 HSLFLQQQPM GEASAARVGN YLPGHLNLLA SLSGGHGNSG RREDDQR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13876	0.0	bud\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	7e-87	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	7e-87	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	7e-87	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	7e-87	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315832.1	1e-178	transcription factor TCP7-like
Refseq	XP_008365949.2	1e-178	transcription factor TCP7-like isoform X1
Swissprot	Q9FMX2	1e-85	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A498I6P9	1e-179	A0A498I6P9_MALDO; Uncharacterized protein
STRING	XP_008365949.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-67	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000238683