PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000237740
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 355aa    MW: 38692 Da    PI: 9.4186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000237740genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18222255134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+t +TplWR+gp+g+k+LCnaCG+++rk +
  MDP0000237740 222 CSDCNTNTTPLWRSGPRGPKSLCNACGIRQRKAR 255
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-18216267IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558216252IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-12217257No hitNo description
Gene3DG3DSA:3.30.50.109.2E-15220256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.71E-13221253No hitNo description
PfamPF003205.3E-16222255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMTPVYLNPP PSPFSHVEQA NDQEQRLKLF ISSSYTNQAA ASSCSSLISS FPTFFDSFED  60
QRAGSSSTTT TTTTLGHDQS LLYHHKADKH IRDCGTRTYD QASKSSSLVQ PHVVDVIGNK  120
DHRLMSAYAD HEREINGRGG EEEGKSNNNI RPRAVKWMSS KMGLMQEMTN PDLAPAGTTG  180
NHIPAAAEIA EHKFRVVQYQ ENSDETSFSR NNNKTTPAVR VCSDCNTNTT PLWRSGPRGP  240
KSLCNACGIR QRKARKAMAE AAAAAANGFV VGATDTSSAK GKVANKEKKX RGSHSKNKSK  300
LIVTDTPSVP PNNKINSNNN KICFKGLGFQ RVFPQDVAEA AILLMELSCG LINHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377680.20.0GATA transcription factor 21-like
TrEMBLA0A498J8E00.0A0A498J8E0_MALDO; Glycine cleavage system P protein
STRINGXP_008377680.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-17GATA family protein